Publications

Research publications acknowledging COBRE CMADP grant funding and/or Core Lab facility use

How (and when) should I credit COBRE CMADP in my publication?

Phase 3 Publications (NIH P30GM145499 and/or P20GM103638)

  1. Childers K, Freed IM, Hupert ML, Shaw B, Larsen N, Herring P, Norton JH, Shiri F, Vun J, August KJ, Witek MA, Soper SA. Novel thermoplastic microvalves based on an elastomeric cyclic olefin copolymer. Lab Chip.2024 Sep 10;24(18):4422-4439. doi: 10.1039/d4lc00501e. PMC11339931.
  2. De Silva M, Opallage PM, Dunn RC. Investigation of induced electroosmotic flow in small-scale capillary electrophoresis devices: Strategies for control and reversal. Electrophoresis.2024 Oct;45(19-20):1764-1774. doi: 10.1002/elps.202400107. Epub 2024 Jul 25. PMC11502244.
  3. De Silva Mohotti N, Kobayashi H, Williams JM, Binjawadagi R, Evertsen MP, Christ EG, Hartley MD. Lipidomic Analysis Reveals Differences in the Extent of Remyelination in the Brain and Spinal Cord. J. Proteome Res.2024 Aug 2;23(8):2830-2844. doi: 10.1021/acs.jproteome.3c00443. Epub 2023 Nov 29. PMC11133230.
  4. Gyllenhaal EF, Brady SS, DeCicco LH, Naikatini A, Hime PM, Manthey JD, Kelly J, Moyle RG, Andersen MJ. Waves of Colonization and Gene Flow in a Great Speciator. bioRxiv [Preprint]. 2024 Jul 22:2024.07.18.603796. doi: 10.1101/2024.07.603796. PMC11291091.
  5. Jin Y, Basu S, Feng M, Ning Y, Munasinghe I, Joachim AM, Li J, Qin L, Madden R, Burks H, Gao P, Wu JQ, Sheikh SW, Joice AC, Perera C, Werbovetz KA, Zhang K, Wang MZ. CYP5122A1 encodes an essential sterol C4-methyl oxidase in Leishmania donovani and determines the antileishmanial activity of antifungal azoles. Nat Commun. 2024 Oct 31;15(1):9409. doi: 10.1038/s41467-024-53790-5. PMC11528044.
  6. Kurfman EA, Mora MF, Willis PA, Lunte SM. Development of capillary electrophoresis methods for the detection of microbial metabolites on potential future spaceflight missions. Electrophoresis.2024 Oct;45(19-20):1684-1691. doi: 10.1002/elps.202400073. Epub 2024 Jun 26. PMC11502272.
  7. Mandal GH, Kelley SP, Sathyamoorthi S. Enantioselective Total Syntheses of (+)-Kasugamycin and (+)-Kasuganobiosamine Highlighting a Sulfamate-Tethered Aza-Wacker Cyclization Strategy. Org Lett.2024 Jul 5;26(26):5463-5466. doi: 10.1021/acs.orglett.4c01726. Epub 2024 Jun 21. PMC11226349.
  8. Sanderson BJ, Sims-West DJ, Macdonald SJ. Acute exposure to mercury drives changes in gene expression in Drosophila melanogaster. BMC Res Notes.2024 Sep 30;17(1):279. doi: 10.1186/s13104-024-06945-y. PMC11443822.
  9. Sperstad PD, Holmstrom ED. Conformational dynamics of the hepatitis C virus 3'X RNA. RNA.2024 Aug 16;30(9):1151-1163. doi: 10.1261/rna.079983.124. PMC11331413.
  10. Veltsos P, Madrigal-Roca LJ, Kelly JK. Testing the evolutionary theory of inversion polymorphisms in the yellow monkeyflower (Mimulus guttatus). Nat Commun.2024 Nov 29;15(1):10397. doi: 10.1038/s41467-024-54534-1. PMC11607379.
  11. Witek MA, Larkey NE, Bartakova A, Hupert ML, Mog S, Cronin JK, Vun J, August KJ, Soper SA. Microfluidic Affinity Selection of B-Lineage Cells from Peripheral Blood for Minimal Residual Disease Monitoring in Pediatric B-Type Acute Lymphoblastic Leukemia Patients. Int J Mol Sci. 2024 Oct 2;25(19):10619. doi: 10.3390/ijms251910619. PMC11477226.
  1. Alhammad YM, Parthasarathy S, Ghimire R, Kerr CM, O'Connor JJ, Pfannenstiel JJ, Chanda D, Miller CA, Baumlin N, Salathe M, Unckless RL, Zuñiga S, Enjuanes L, More S, Channappanavar R, Fehr AR. SARS-CoV-2 Mac1 is required for IFN antagonism and efficient virus replication in cell culture and in mice. Proc Natl Acad Sci U S A.2023 Aug 29;120(35):e2302083120. doi: 10.1073/pnas.2302083120. Epub 2023 Aug 22. PMC10468617
  2. Andres EM, Earnest KK, Xuan H, Zhong C, Rice ML, Raza MH. Innovative Family-Based Genetically Informed Series of Analyses of Whole-Exome Data Supports Likely Inheritance for Grammar in Children with Specific Language Impairment. Children (Basel).2023 Jun 28;10(7):1119. doi: 10.3390/children10071119. PMID: 37508616; PMCID: PMC10378399.
  3. Apley KD, Griffith AS, Downes GM, Ross P, Farrell MP, Kendall P, Berkland CJ. CD22L Conjugation to Insulin Attenuates Insulin-Specific B Cell Activation. Bioconjug Chem.2023 Nov 15;34(11):2077-2088. Epub 2023 Oct 26. doi: 10.1021/acs.bioconjchem.3c00391. PMC11034786
  4. Burghardt E, Rakijas J, Tyagi A, Majumder P, Olson BJSC, McDonald JA. Transcriptome analysis reveals temporally regulated genetic networks during Drosophila border cell collective migration. BMC Genomics. 2023 Dec 1;24(1):728. doi: 10.1186/s12864-023-09839-8. PMC10693066
  5. DeRaad DA, McCullough JM, DeCicco LH, Hime PM, Joseph L, Andersen MJ, Moyle RG. Mitonuclear discordance results from incomplete lineage sorting, with no detectable evidence for gene flow, in a rapid radiation of Todiramphus kingfishers. Mol Ecol.2023 Sep;32(17):4844-4862. doi: 10.1111/mec.17080. Epub 2023 Jul 29. 
  6. De Silv Mohotti N, Kobayashi H, Williams JM, Binjawadagi R, Evertsen MP, Christ EG, Hartley MD. Lipidomic analysis reveals differences in the extent of remyelination in the brain and spinal cord. bioRxiv.2023 July 26. doi: 10.1101/2023.07.24.550351. PMC10402072
  7. Drapal V, Mosier S, Norman A, Berbel G, Robinson JL, Friis EA. A preliminary In Vitro viability study of an electrically active hernia mesh on mouse fibroblasts. J. Biomater. Appl. 2023 November;38(5):662-669. doi: 10.1177/08853282231209312. PMC11181991
  8. Everman ER, Macdonald SJ. Gene expression variation underlying tissue-specific responses to copper stress in Drosophila melanogaster. bioRxiv.2023 Jul 18;. doi: 10.1101/2023.07.12.548746. PMC10370140
  9. Everman ER, Macdonald SJ. Gene expression variation underlying tissue-specific responses to copper stress in Drosophila melanogaster. G3 (Bethesda, Md.). 2024 March 6;14(3). doi: 10.1093/g3journal/jkae015. PMC11021028
  10. Herzog KS, Hackett JL, Hime PM, Klicka LB, Jensen K. First Insights into Population Structure and Genetic Diversity Versus Host Specificity in Trypanorhynch Tapeworms Using Multiplexed Shotgun Genotyping. Genome Biol Evol.2023 Oct 6;15(10):evad190. doi: 10.1093/gbe/evad190. PMC10616631
  11. Hettiarachchi P, Niyangoda S, Shigemoto A, Solowiej IJ, Burdette SC, Johnson MA. Caged Zn2+ Photolysis in Zebrafish Whole Brains Reveals Subsecond Modulation of Dopamine Uptake. ACS Chem. Neurosci.2024 February 21;15(4):772-782. doi: 10.1021/acschemneuro.3c00668. PMC11036533
  12. Hooper KM, Lundquist EA. Short- and long-range roles of UNC-6/Netrin in dorsal-ventral axon guidance in vivo in Caenorhabditis elegans. bioRxiv [Preprint]. 2024 Apr 23:2024.04.23.590737. doi: 10.1101/2024.04.23.590737.  PMC11071391.
  13. Jin Y, Basu S, Feng M, Ning Y, Munasinghe I, Joachim AM, Li J, Madden R, Burks H, Gao P, Perera C, Werbovetz KA, Zhang K, Wang MZ. CYP5122A1 encodes an essential sterol C4-methyl oxidase in Leishmania donovani and determines the antileishmanial activity of antifungal azoles. Research square.2023 July 27. doi: 10.21203/rs.3.rs-3185204/v1. PMC10402201
  14. Kim H, Kirtane AR, Kim NY, Rajesh NU, Tang C, Ishida K, Hayward AM, Langer R, Traverso G. Gastrointestinal Delivery of an mRNA Vaccine Using Immunostimulatory Polymeric Nanoparticles. AAPS J.2023 Aug 17;25(5):81. doi: 10.1208/s12248-023-00844-z. PMC10845796
  15. Kumawat S, Martinez I, Logeswaran D, Chen H, Coughlan JM, Chen JJ, Yuan Y, Sobel JM, Choi JY. Transposition, duplication, and divergence of the telomerase RNA underlies the evolution of Mimulus telomeres. bioRxiv. 2023 December 7. doi: 10.1101/2023.12.06.568249. PMC10723376
  16. Kywe C, Lundquist EA, Ackley BD, Lansdon P. The MAB-5/Hox family transcription factor is important for C. elegans Innate Immune Response to S. epidermidis Infection. G3 (Bethesda, Md.). 2024 March 13. doi: 10.1093/g3journal/jkae054. PMC11075571
  17. Lavery TH, DeRaad DA, Holland PS, Olson KV, DeCicco LH, Seddon JM, Leung LK, Moyle RG. Parallel evolution in an island archipelago revealed by genomic sequencing of Hipposideros leaf-nosed bats. Evolution. 2024 May 29;78(6):1183-1192. doi: 10.1093/evolut/qpae039. PMC11135615.
  18. Mahadik SS, Burt EK, Lundquist EA. SRC-1 controls growth cone polarity and protrusion with the UNC-6/Netrin receptor UNC-5 in Caenorhabditis elegans. bioRxiv [Preprint]. 2023 May 20:2023.05.20.541322. doi: 10.1101/2023.05.20.541322. Update in: PLoS One.2024 May 21;19(5):e0295701. doi: 10.1371/journal.pone.0295701. PMC10245697.
  19. Mahadik SS, Lundquist EA. A short isoform of the UNC-6/Netrin receptor UNC-5 is required for growth cone polarity and robust growth cone protrusion in Caenorhabditis elegans. Front Cell Dev Biol. 2023 Aug 15;11:1240994. doi: 10.3389/fcell.2023.1240994. eCollection 2023. PMC10464613
  20. Mandal GH, Sathyamoorthi S. Sulfamate-Tethered Aza-Wacker Strategy for a Kasugamine Synthon. J Org Chem. 2024 Jan 5;89(1):793-797. doi: 10.1021/acs.joc.3c02292. Epub 2023 Dec 8. PMC10798055
  21. Mullinax SR, Darby AM, Gupta A, Chan P, Smith BR, Unckless RL. A suite of selective pressures supports the maintenance of alleles of a Drosophila immune peptide. bioRxiv.2023 Aug 21:2023.08.18.553899. doi: 10.1101/2023.08.18.553899. Preprint. PMC10473621
  22. Nagamalla S, Thomas AA, Nirpal AK, Mague JT, Sathyamoorthi S. Ring Opening of Aziridines by Pendant Sulfamates Allows for Regioselective and Stereospecific Preparation of Vicinal Diamines. J Org Chem. 2023 Nov 17;88(22):15989-16006. doi: 10.1021/acs.joc.3c01731. Epub 2023 Oct 30. PMC10799289
  23. Nepal S, Holmstrom ED. Single-molecule-binding studies of antivirals targeting the hepatitis C virus core protein. J Virol.2023 Oct 31;97(10):e0089223. doi: 10.1128/jvi.00892-23. PMC10617558
  24. Neupane S, Talley JL, Taylor DB, Nayduch D. Bacterial communities and prevalence of antibiotic resistance genes carried within house flies (Diptera: Muscidae) associated with beef and dairy cattle farms. J Med Entomol.2023 Nov 14;60(6):1388-1397. doi: 10.1093/jme/tjad112. 
  25. Paolillo VK, Ochs ME, Lundquist EA. MAB-5/Hox regulates the Q neuroblast transcriptome, including cwn-1/Wnt, to mediate posterior migration in Caenorhabditis elegans. bioRxiv [Preprint]. 2023 Nov 11:2023.11.09.566461. doi: 10.1101/2023.11.09.566461. Update in: Genetics.2024 Jun 5;227(2):iyae045. doi: 10.1093/genetics/iyae045. PMC10659417.
  26. Parthasarathy S, Saenjamsai P, Hao H, Ferkul A, Pfannenstiel JJ, Suder EL, Bejan DS, Chen Y, Schwarting N, Aikawa M, Muhlberger E, Orozco RC, Sullivan CS, Cohen MS, Davido DJ, Hume AJ, Fehr AR. PARP14 is pro- and anti-viral host factor that promotes IFN production and affects the replication of multiple viruses. bioRxiv [Preprint]. 2024 Apr 26:2024.04.26.591186. doi: 10.1101/2024.04.26.591186. PMCID: PMC11071520.
  27. Rathnayaka C, Chandrosoma IA, Choi J, Childers K, Chibuike M, Akabirov K, Shiri F, Hall AR, Lee M, McKinney C, Verber M, Park S, Soper SA. Detection and identification of single ribonucleotide monophosphates using a dual in-plane nanopore sensor made in a thermoplastic via replication. Lab Chip.2024 May 14;24(10):2721-2735. doi: 10.1039/d3lc01062g. PMC11091956.
  28. Shiri F, Choi J, Vietz C, Rathnayaka C, Manoharan A, Shivanka S, Li G, Yu C, Murphy MC, Soper SA, Park S. Nano-injection molding with resin mold inserts for prototyping of nanofluidic devices for single molecular detection. Lab Chip. 2023 Nov 7;23(22):4876-4887. doi: 10.1039/d3lc00543g. PMC10995647
  29. Smith BR, Patch KB, Gupta A, Knoles EM, Unckless RL. The genetic basis of variation in immune defense against Lysinibacillus fusiformis infection in Drosophila melanogaster. PLoS Pathog. 2023 Aug;19(8):e1010934. doi: 10.1371/journal.ppat.1010934. eCollection 2023 Aug. PMC10434897
  30. Tang Z, Zhao J, Li Y, Tomer S, Selvaraju M, Tien N, Sun D, Johnson DK, Zhen A, Li P, Wang J. Structural and Biological Evaluations of a Non-Nucleoside STING Agonist Specific for Human STINGA230 Variants. bioRxiv. 2023 Jul 10:2023.07.02.547363. doi: 10.1101/2023.07.02.547363. Preprint. PMC10327114
  31. Vaidyanathan S, Wijerathne H, Gamage SST, Shiri F, Zhao Z, Choi J, Park S, Witek MA, McKinney C, Verber M, Hall AR, Childers K, McNickle T, Mog S, Yeh E, Godwin AK, Soper SA. High Sensitivity Extended Nano-Coulter Counter for Detection of Viral Particles and Extracellular Vesicles. Anal. Chem. 2023 July 4;95(26):9892-9900. doi: 10.1021/acs.analchem.3c00855. PMC11015478
  32. Veltsos P, Kelly JK. The quantitative genetics of gene expression in Mimulus guttatus. bioRxiv [Preprint]. 2023 Nov 21:2023.11.21.568003. doi: 10.1101/2023.11.21.568003. Update in: PLoS Genet. 2024 Apr 11;20(4):e1011072. doi: 10.1371/journal.pgen.1011072. PMCID: PMC10690227.
  33. Wessinger CA, Katzer AM, Hime PM, Rausher MD, Kelly JK, Hileman LC. A few essential genetic loci distinguish Penstemon species with flowers adapted to pollination by bees or hummingbirds. PLoS Biol. 2023 Sep;21(9):e3002294. doi: 10.1371/journal.pbio.3002294. eCollection 2023 Sep. PMC10538765
  1. Alexander A, Robbins MB, Holmes J, Moyle RG, Peterson AT. Limited movement of an avian hybrid zone in relation to regional variation in magnitude of climate change. Mol Ecol. 2022 Dec;31(24):6634-6648. doi: 10.1111/mec.16727. Epub 2022 Oct 21. PMID: 36210655; PMCID: PMC9729445.
  2. Alhammad YM, Parthasarathy S, Ghimire R, O'Connor JJ, Kerr CM, Pfannenstiel JJ, Chanda D, Miller CA, Unckless RL, Zuniga S, Enjuanes L, More S, Channappanavar R, Fehr AR. SARS-CoV-2 Mac1 is required for IFN antagonism and efficient virus replication in mice. bioRxiv. 2023 Apr 6:2023.04.06.535927. doi: 10.1101/2023.04.06.535927. Preprint. PMC10104158
  3. Hettiarachchi P, Johnson MA. Characterization of D3 Autoreceptor Function in Whole Zebrafish Brain with Fast-Scan Cyclic Voltammetry. ACS Chem Neurosci. 2022 Oct 5;13(19):2863-2873. doi: 10.1021/acschemneuro.2c00280. Epub 2022 Sep 13. PMID: 36099546; PMCID: PMC10105970.
  4. Hettiarachchi P, Niyangoda SS, Jarosova R, Johnson MA. Dopamine Release Impairments Accompany Locomotor and Cognitive Deficiencies in Rotenone-Treated Parkinson's Disease Model Zebrafish. Chem Res Toxicol. 2022 Nov 21;35(11):1974-1982. doi: 10.1021/acs.chemrestox.2c00150. Epub 2022 Sep 30. PMID: 36178476; PMCID: PMC10127151.
  5. Jarosova R, Woolfolk SK, Martinez-Rivera N, Jaeschke MW, Rosa-Molinar E, Tamerler C, Johnson MA. Spatiotemporal Imaging of Zinc Ions in Zebrafish Live Brain Tissue Enabled by Fluorescent Bionanoprobes. Molecules. 2023 Feb 28;28(5):2260. PMID: 36903504; PMCID: PMC10005619.
  6. Lou H, Hageman MJ. Development of Drug Release Model for Suspensions in ESCAR (Emulator of SubCutaneous Absorption and Release). AAPS J. 2023 Mar 22;25(3):29. doi: /10.1208/s12248-023-00799-1. PMID: 36949301; PMCID: PMC10184886.
  7. Mahadik SS, Burt EK, Lundquist EA. SRC-1 controls growth cone polarity and protrusion with the UNC-6/Netrin receptor UNC-5 in Caenorhabditis elegans. bioRxiv [Preprint]. 2023 May 20:2023.05.20.541322. doi: 10.1101/2023.05.20.541322. PMID: 37292733; PMCID: PMC10245697.
  8. Mahadik SS, Lundquist EA. A short isoform of the UNC-6/Netrin receptor UNC-5 is required for growth cone polarity and robust growth cone protrusion in Caenorhabditis elegans. bioRxiv [Preprint]. 2023 May 3:2023.05.02.539117. doi: 10.1101/2023.05.02.539117. PMID: 37205526; PMCID: PMC10187218.
  9. Privitera A, Cardaci V, Weerasekara D, Saab MW, Diolosà L, Fidilio A, Jolivet RB, Lazzarino G, Amorini AM, Camarda M, Lunte SM, Caraci F, Caruso G. Microfluidic/HPLC combination to study carnosine protective activity on challenged human microglia: Focus on oxidative stress and energy metabolism. Front Pharmacol.2023 Mar 29;14:1161794. doi: 10.3389/fphar.2023.1161794. PMID: 37063279; PMCID: PMC10095171.

Phase 2 Publications (NIH P20GM103638)

  1. Abisado-Duque RG, Townsend KA, Mckee BM, Woods K, Koirala P, Holder AJ, Craddock VD, Cabeen M, Chandler JR. An Amino Acid Substitution in Elongation Factor EF-G1A Alters the Antibiotic Susceptibility of Pseudomonas aeruginosa LasR-Null Mutants. J Bacteriol.2023 Jun 27;205(6):e0011423. doi: 10.1128/jb.00114-23. Epub 2023 May 16. PMID: 37191503; PMCID: PMC10294626.
  2. Abisado-Duque RG, McKee BM, Townsend KA, Woods K, Koirala P, Holder AJ, Craddock VD, Cabeen MT, Chandler JR. Tobramycin adaptation alters the antibiotic susceptibility of Pseudomonas aeruginosa quorum sensing-null mutants. bioRxiv [Preprint]. 2023 Mar 19:2023.01.13.523864. doi: 10.1101/2023.01.13.523864. Update in: J Bacteriol. 2023 May 16;:e0011423. PMID: 36711731; PMCID: PMC9882136.
  3. Alexander A, Robbins MB, Holmes J, Moyle RG, Peterson AT. Limited movement of an avian hybrid zone in relation to regional variation in magnitude of climate change. Mol Ecol. 2022 Dec;31(24):6634-6648. doi: 10.1111/mec.16727. Epub 2022 Oct 21. PMID: 36210655; PMCID: PMC9729445.
  4. Athapattu US, Rathnayaka C, Vaidyanathan S, Gamage SST, Choi J, Riahipour R, Manoharan A, Hall AR, Park S, Soper SA. Tailoring Thermoplastic In-Plane Nanopore Size by Thermal Fusion Bonding for the Analysis of Single Molecules. ACS Sens.2021 Aug 27;6(8):3133-3143. PMID: 34406743; PMCID: PMC8482307.
  5. Bansal S, Floyd ER, Kowalski M, Aikman E, Elrod P, Burkey K, Chahla J, LaPrade RF, Maher SA, Robinson JL, Patel JM. Meniscal Repair: The Current State and Recent Advances in Augmentation. J Orthop Res.2021 Jul;39(7):1368-1382. Review. PMID: 33751642; PMCID: PMC8249336.
  6. Budiardjo SJ, Stevens JJ, Calkins AL, Ikujuni AP, Wimalasena VK, Firlar E, Case DA, Biteen JS, Kaelber JT, Slusky JSG. Colicin E1 opens its hinge to plug TolC. Elife. 2022 Feb 24;11:e73297. doi: 10.7554/eLife.73297. PMID: 35199644; PMCID: PMC9020818.
  7. Calle-Tobón A, Holguin-Rocha AF, Moore C, Rippee-Brooks M, Rozo-Lopez P, Harrod J, Fatehi S, Rua-Uribe GL, Park Y, Londoño-Rentería B. Blood Meals With Active and Heat-Inactivated Serum Modifies the Gene Expression and Microbiome of Aedes albopictus. Front Microbiol. 2021 Sep 9:12:724345. doi: 10.3389/fmicb.2021.724345. eCollection 2021. PMID: 34566927; PMCID: PMC8458951.
  8. Chan KO, Hutter CR, Wood PL Jr., Su Y-C, Brown RM. Gene flow increases phylogenetic structure and inflates cryptic species estimations: a case study on widespread Philippine puddle frogs (Occidozyga laevis). Syst Biol. 2021 Dec 16;71:40–57. doi.org/10.1093/sysbio/syab034. PMID: 33964168
  9. de Mello PLH, Hime PM, Glor RE. Transcriptomic Analysis of Skin Color in Anole Lizards. Genome Biol Evol.2021 Jul 6;13(7):evab110. PMID: 33988681; PMCID: PMC8290120.
  10. Dimond ZE, Suchland RJ, Baid S, LaBrie SD, Soules KR, Stanley J, Carrell S, Kwong F, Wang Y, Rockey DD, Hybiske K, Hefty PS. Inter-species lateral gene transfer focused on the Chlamydia plasticity zone identifies loci associated with immediate cytotoxicity and inclusion stability. Mol Microbiol. 2021 Dec;116(6):1433-1448. PMID: 34738268; PMCID: PMC9119408.
  11. Do N, Ackley BD, Landson P. Draft Genome Sequence of Novel Staphylococcus epidermidis Strain EVL2000, Exhibiting Pathogenicity against Caenorhabditis elegans. Microbiol Resour Announc.2022 Apr 21;11(4):e0123921. Epub 2022 Mar 14. PMID: 35286161; PMCID: PMC9022524.
  12. Dorador AP, Dalikova M, Cerbin S, Stillman CM, Zych MG, Hawley RS, Miller DE, Ray DA, Funikov SY, Evgen'ev MB, Blumenstiel JP. Paramutation-like Epigenetic Conversion by piRNA at the Telomere of Drosophila virilis. Biology (Basel). 2022 Oct 9;11(10):1480. doi: 10.3390/biology11101480. PMID: 36290385; PMCID: PMC9598792.
  13. Everman ER, Macdonald SJ, Kelly JK. 2023. The genetic basis of adaptation to copper pollution in Drosophila melanogaster.Front. Genet., 04 April 2023; 14:1144221. doi: 10.3389/fgene.2023.1144221. eCollection 2023. PMID: 37082199; PMCID: PMC10110907.
  14. Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ. Cell activation-based screening of natively paired human T cell receptor repertoires. Sci Rep.2023 May 17;13(1):8011. doi: 10.1038/s41598-023-31858-4. PMID: 37198258; PMCID: PMC10192375.
  15. Fahad AS, Chung CY, Lopez Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ. Immortalization and functional screening of natively paired human T cell receptor repertoires. Protein Eng Des Sel. 2022 Feb 17;35:gzab034. PMID: 35174859; PMCID: PMC9005053.
  16. Felmlee KR, Macdonald SJ, Everman ER. Pre-adult exposure to three heavy metals leads to changes in the head transcriptome of adult flies. MicroPubl Biol. 2022 Jul 2;2022:10.17912/micropub.biology.000591. doi: 10.17912/micropub.biology.000591. PMID: 35856016; PMCID: PMC9287740.
  17. Gamage SST, Pahattuge TN, Wijerathne H, Childers K, Vaidyanathan S, Athapattu US, Zhang L, Zhao Z, Hupert ML, Muller RM, Muller-Cohn J, Dickerson J, Dufek D, Geisbrecht BV, Pathak H, Pessetto Z, Gan GN, Choi J, Park S, Godwin AK, Witek MA, Soper SA. Microfluidic affinity selection of active SARS-CoV-2 virus particles. Sci Adv. 2022 Sep 30;8(39):eabn9665. PMID: 36170362; PMCID: PMC9519043.
  18. Gunawardhana SM, Holmstrom ED. Apolar chemical environments compact unfolded RNAs and can promote folding. Biophys Rep (N Y). 2021 Sep 8;1(1):100004. doi: 10.1016/j.bpr.2021.100004. Epub 2021 Jul 21. PMID: 35382036; PMCID: PMC8978554.
  19. Hasan MK, El Qaidi S, McDonald P, Roy A, Hardwidge PR. Repurposing Avasimibe to Inhibit Bacterial Glycosyltransferases. Pathogens. 2022 Mar 17;11(3):370. doi: 10.3390/pathogens11030370. PMID: 35335693; PMCID: PMC8953086.
  20. Hill T, Unckless RL, Perlmutter JI. Positive Selection and Horizontal Gene Transfer in the Genome of a Male-Killing Wolbachia. Mol Biol Evol.2022 Jan 7;39(1):msab303. doi: 10.1093/molbev/msab303. PMID: 34662426; PMCID: PMC8763111.
  21. Hu M, Brown V, Jackson JM, Wijerathne H, Pathak H, Koestler DC, Nissen E, Hupert ML, Muller R, Godwin AK, Witek MA, Soper SA. Assessing Breast Cancer Molecular Subtypes Using Extracellular Vesicles' mRNA. Anal Chem.2023 May 16;95(19):7665-7675. doi: 10.1021/acs.analchem.3c00624. Epub 2023 Apr 18. PMID: 37071799; PMCID: PMC10243595.
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14.  Kaplan SV, Limbocker RA, Levant B, Johnson MA. Regional differences in dopamine release in the R6/2 mouse caudate putamen. Electroanalysis.2018 Jun;30(6):1066-1072.827. PubMed PMID: 29955208; PubMed Central PMCID: PMC6016844.

15.  McGill JL, Kelly SM, Kumar P, Speckhart S, Haughney SL, Henningson J, Narasimhan B, Sacco RE. Efficacy of mucosal polyanhydride nanovaccine against respiratory syncytial virus infection in the neonatal calf. Sci Rep.2018 Feb 14;8(1):3021. PubMed PMID: 29445124; PubMed Central PMCID: PMC5813012.

16.  Modaresi S, Pacelli S, Whitlow J, Paul A. Deciphering the role of substrate stiffness in enhancing the internalization efficiency of plasmid DNA in stem cells using lipid-based nanocarriers. Nanoscale. 2018 May 17;10(19):8947-8952. PubMed PMID: 29693099; PubMed Central PMCID: PMC5957767.

17.  Pacelli S, Acosta F, Chakravarti AR, Samanta SG, Whitlow J, Modaresi S, Ahmed RPH, Rajasingh J, Paul A. Nanodiamond-based injectable hydrogel for sustained growth factor release: Preparation, characterization and in vitro analysis. Acta Biomater.2017 Aug;58:479-491. PubMed PMID: 28532899; PubMed Central PMCID: PMC5560430.

18.  Pacelli S, Basu S, Berkland C, Wang J, Paul A. Design of a cytocompatible hydrogel coating to modulate properties of ceramic-based scaffolds for bone repair. Cell Mol Bioeng. 2018 Jun;11(3):211-217. Epub 2018 Apr 6. PubMed PMID: 30338007; PubMed Central PMCID: PMC6188648.

19.  Pacelli S, Basu S, Whitlow J, Chakravarti A, Acosta F, Varshney A, Modaresi S, Berkland C, Paul A. Strategies to develop endogenous stem cell-recruiting bioactive materials for tissue repair and regeneration. Adv Drug Deliv Rev.2017 Oct 1;120:50-70. Review. PubMed PMID: 28734899; PubMed Central PMCID: PMC5705585.

20.  Pacelli S, Maloney R, Chakravarti AR, Whitlow J, Basu S, Modaresi S, Gehrke S, Paul A. Controlling Adult Stem Cell Behavior Using Nanodiamond-Reinforce Hydrogel: Implication in Bone Regeneration Therapy. Sci Rep.2017 Jul 26;7(1):6577. PubMed PMID: 28747768; PubMed Central PMCID: PMC5529511.

21.  Reeves WM, Wu Y, Harder MJ, Veeman MT. Functional and evolutionary insights from the Ciona notochord transcriptome. Development. 2017 Sep 15;144(18):3375-3387. PubMed PMID: 28928284; PubMed Central PMCID: PMC5612257.

22.  Rusk RA, Palmer MV, Waters WR, McGill JL. Measuring bovine γδ T cell function at the site of Mycobacterium bovis infection. Vet Immunol Immunopathol.2017 Dec;193-194:38-49. PubMed PMID: 29129226; PubMed Central PMCID: PMC5703227.

23.  Saylor RA, Lunte SM. PDMS/glass hybrid device with a reusable carbon electrode for on-line monitoring of catecholamines using microdialysis sampling coupled to microchip electrophoresis with electrochemical detection. Electrophoresis. 2018 Feb;39(3):462-469. PubMed PMID: 28737835; PubMed Central PMCID: PMC5783789.

24.  Shin M, Field TM, Stucky CS, Furgurson MN, Johnson MA. Ex Vivo Measurement of Electrically Evoked Dopamine Release in Zebrafish Whole Brain. ACS Chem Neurosci.2017 Sep 20;8(9):1880-1888. PubMed PMID: 28617576; PubMed Central PMCID: PMC5846466.

25.  Smith BR, Unckless RL. Draft Genome Sequence of Lysinibacillus fusiformis Strain Juneja, a Laboratory-Derived Pathogen of Drosophila melanogaster. Genome Announc. 2018 Feb 1;6(5). pii: e01571-17. doi: 10.1128/genomeA.01571-17. PubMed PMID: 29437109; PubMed Central PMCID: PMC5794956.

26.  Waters R, Alam P, Pacelli S, Chakravarti AR, Ahmed RPH, Paul A. Stem cell-inspired secretome-rich injectable hydrogel to repair injured cardiac tissue. Acta Biomater. 2018 Mar 15;69:95-106. PubMed PMID: 29281806; PubMed Central PMCID: PMC5831493.

27.  Whitlow J, Pacelli S, Paul A. Multifunctional nanodiamonds in regenerative medicine: Recent advances and future directions. J Control Release. 2017 Sep 10;261:62-86. PubMed PMID: 28596105; PubMed Central PMCID: PMC5560434.

28.  Zhu Q, Heon M, Zhao Z, He M. Microfluidic engineering of exosomes: editing cellular messages for precision therapeutics. Lab Chip. 2018 Jun 12;18(12):1690-1703. PubMed PMID: 29780982; PubMed Central PMCID: PMC5997967.

Phase 1 Publications (NIH P20GM103638)

1.  Eshelman K, Yao H, Punchi Hewage AN, Deay JJ, Chandler JR, Rivera M. Inhibiting the BfrB:Bfd interaction in Pseudomonas aeruginosa causes irreversible iron accumulation in bacterioferritin and iron deficiency in the bacterial cytosol. Metallomics2017 Jun 21;9(6):646-659. PubMed PMID: 28318006; PubMed Central PMCID: PMC5494978.

2.  Fischer A, Harrison KS, Ramirez Y, Auer D, Chowdhury SR, Prusty BK, Sauer F, Dimond Z, Kisker C, Hefty PS, Rudel T. Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense. Elife.2017 Mar 28;6. pii: e21465. PubMed PMID: 28347402; PubMed Central PMCID: PMC5370187.

3.  Fresta CG, Hogard ML, Caruso G, Melo Costa EE, Lazzarino G, Lunte SM. Monitoring carnosine uptake by RAW 264.7 macrophage cells using microchip electrophoresis with fluorescence detection. Anal. Methods2017Jan 21;9(3):402-408. PubMed PMID: 29104617; PubMed Central PMCID: PMC5663230.

4.  Godar SC, Bortolato M. What makes you tic? Translational approaches to study the role of stress and contextual triggers in Tourette syndrome. Neurosci Biobehav Rev.2017 May;76(Pt A):123-133. PubMed PMID: 27939782; PubMed Central PMCID: PMC5403589.

5.  Godar SC, Mosher LJ, Strathman HJ, Gochi AM, Jones CM, Fowler SC, Bortolato M. The D1CT-7 mouse model of Tourette syndrome displays sensorimotor gating deficits in response to spatial confinement. Br J Pharmacol. 2016 Jul;173(13):2111-21. PubMed PMID: 26171666. PubMed Central PMCID: PMC4908200.

6.  Hackett JL, Wang X, Smith BR, Macdonald SJ. Mapping QTL Contributing to Variation in Posterior Lobe Morphology between Strains of Drosophila melanogaster. PLoS One.2016 Sep 8;11(9):e0162573. PubMed PMID: 27606594; PubMed Central PMCID: PMC5015897.

7.  Hasan A, Waters R, Roula B, Dana R, Yara S, Alexandre T, Paul A. Engineered Biomaterials to Enhance Stem Cell-Based Cardiac Tissue Engineering and Therapy. Macromol Biosci.2016 Jul;16(7):958-77. PubMed PMID: 26953627; PubMed Central PMCID: PMC4931991.

8.  He M, Zeng Y. Microfluidic Exosome Analysis toward Liquid Biopsy for Cancer. J. Lab Autom. 2016 Aug;21(4):599-608. PubMed PMID: 27215792; PubMed Central PMCID: PMC5556932.

9.  Highfill CA, Reeves GA, Macdonald SJ. Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population. BMC Genet. 2016 Aug 2;17:113. PubMed PMID: 27485207; PubMed Central PMCID: PMC4970266.

10.  Huang W, Beer RL, Delaspre F, Wang G, Edelman HE, Park H, Azuma M, Parsons MJ. Sox9b is a mediator of retinoic acid signaling restricting endocrine progenitor differentiation. Dev Biol. 2016 Oct 1;418(1):28-39. PubMed PMID: 27565026; PubMed Central PMCID: PMC5031550.

11.  Josephson MP, Aliani R, Norris ML, Ochs ME, Gujar M, Lundquist EA. The Caenorhabditis elegans NF2/Merlin Molecule NFM-1 Nonautonomously Regulates Neuroblast Migration and Interacts Genetically with the Guidance Cue SLT-1/Slit. Genetics2017 Feb;205(2):737-748. PubMed PMID: 27913619; PubMed Central PMCID: PMC5289848.

12.  Lee MM, Gao Z, Peterson BR. Synthesis of a Fluorescent Analogue of Paclitaxel That Selectively Binds Microtubules and Sensitively Detects Efflux by P-Glycoprotein. Angew Chem Int Ed Engl. 2017 Jun 6;56(24):6927-6931.PubMed PMID: 28485901; PubMed Central PMCID: PMC5679005.

13.  Lee MM, Peterson BR. Quantification of Small Molecule-Protein Interactions using FRET between Tryptophan and the Pacific Blue Fluorophore. ACS Omega.2016 Dec 31;1(6):1266-1276. PubMed ID: 28058293; PubMed Central PMCID: PMC5204206.

14.  Manthey JD, Campillo LC, Burns KJ, Moyle RG. Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga). Syst Biol. 2016 Jul;65(4):640-50. Epub 2016 Jan 28. PubMed PMID: 26821912; PubMed Central PMCID: PMC5841389.

15.  Mosher LJ, Frau R, Pardu A, Pes R, Devoto P, Bortolato M. Selective activation of D1 dopamine receptors impairs sensorimotor gating in Long-Evans rats. Br J Pharmacol.2016 Jul;173(13):2122-34; PubMed PMID: 26101934; PubMed Central PMCID: PMC4908197.

16.  Moyle RG, Oliveros CH, Andersen MJ, Hosner PA, Benz BW, Manthey JD, Travers SL, Brown RM, Faircloth BC. Tectonic collision and uplift of Wallacea triggered the global songbird radiation. Nat Commun.2016 Aug 30;7:12709. PubMed PMID: 27575437; PubMed Central PMCID: PMC5013600.

17.  Oakley CE, Ahuja M, Sun WW, Entwistle R, Akashi T, Yaegashi J, Guo CJ, Cerqueira GC, Russo Wortman J, Wang CC, Chiang YM, Oakley BR. Discovery of McrA, a master regulator of Aspergillus secondary metabolism. Mol Microbiol.2017 Jan;103(2):347-365. PubMed PMID: 27775185; PubMed Central PMCID: PMC5218965.

18.  Pacelli S, Manoharan V, Desalvo A, Lomis N, Jodha KS, Prakash S, Paul A. Tailoring biomaterial surface properties to modulate host-implant interactions: implication in cardiovascular and bone therapy. J. Mater. Chem. B. 2016; 4(9):1586-1599. PubMed Central PMCID: PMC5019489.

19.  Park H, Galbraith R, Turner T, Mehojah J, Azuma M. Loss of Ewing sarcoma EWS allele promotes tumorigenesis by inducing chromosomal instability in zebrafish. Sci Rep. 2016 Aug 25;(6):32297. PubMed PMID: 27557633; PubMedCentral PMCID: PMC4997631.

20.  Pes R, Godar SC, Fox AT, Burgeno LM, Strathman HJ, Jarmolowicz DP, Devoto P, Levant B, Phillips PE, Fowler SC, Bortolato M. Pramipexole enhances disadvantageous decision-making: Lack of relation to changes in phasic dopamine release. Neuropharmacology 2017 Mar 1;114:77-87. PubMed ID: 27889491; PubMed Central PMCID: PMC5241163.

21.  Phaniraj S, Gao Z, Rane D, Peterson BR. Hydrophobic resorufamine derivatives: potent and selective red fluorescent probes of the endoplasmic reticulum of mammalian cells. Dyes Pigm. 2016 Dec;135:127-133. PubMed ID: 27765999; PubMed Central PMCID: PMC5066811.

22.  Plevniak K, Campbell M, Myers T, Hodges A, He, M. 3D Printed Auto-mixing Chip Enables Rapid Smartphone Diagnosis of Anemia. Biomicrofluidics2016 Oct 5;10(5):054113. eCollection 2016. PubMed ID: 27733894; PubMed Central PMCID: PMC5055529.

23.  Shankar M, Hossain MS, Biswas I. Pleiotropic Regulation of Virulence Genes in Streptococcus mutans by the Conserved Small Protein SprV. J Bacteriol. 2017 Mar 28;199(8). pii: e00847-16. PubMed ID: 28167518; PubMed Central PMCID: PMC5370425.

24.  Sofis MJ, Jarmolowicz DP, Kaplan SV, Gehringer RC, Lemley SM, Garg G, Blagg BS, Johnson MA. KU32 prevents 5-fluorouracil induced cognitive impairment. Behav Brain Res.2017 Jun 30;329:186-190. PubMed PMID: 28359881; PubMed Central PMCID: PMC5846472.

25.  Tseng BS, Majerczyk CD, Passos da Silva D, Chandler JR, Greenberg EP, Parsek MR. Quorum Sensing Influences Burkholderia thailandensis Biofilm Development and Matrix Production. J Bacteriol. 2016 Sep 9;198(19):2643-50. PubMed PMID: 27068594; PubMed Central PMCID: PMC5019063.

26.  Zhang P,He M, Zeng Y. Ultrasensitive microfluidic analysis of circulating exosomes using a nanostructured graphene oxide/polydopamine coating. Lab Chip. 2016 Aug 2;16(16):3033-42. PubMed PMID: 27045543; PubMed Central PMCID: PMC4970962.

1.  Chakraborty A, Hui E, Waring AJ, Dhar P. Combined effect of synthetic protein, Mini-B, and cholesterol on a model lung surfactant mixture at the air-water interface. Biochim Biophys Acta.2016 Apr;1858(4):904-12. PubMed PMID: 26775740; PubMed Central PMCID: PMC5705005.

2.  Colicchio JM, Miura F, Kelly JK, Ito T, Hileman LC. DNA methylation and gene expression in Mimulus guttatus. BMC Genomics. 2015 Jul 7;16:507. PubMed PMID: 26148779; PubMed Central PMCID: PMC4492170.

3.  de Campos RP, Siegel JM, Fresta CG, Caruso G, da Silva JA, Lunte SM. Indirect detection of superoxide in RAW 264.7 macrophage cells using microchip electrophoresis coupled to laser-induced fluorescence. Anal Bioanal Chem.2015 Sep;407(23):7003-12. PubMed PMID: 26159570; PubMed Central PMCID: PMC4898195.

4.  Erwin AA, Galdos MA, Wickersheim ML, Harrison CC, Marr KD, Colicchio JM, Blumenstiel JP. piRNAs Are Associated with Diverse Transgenerational Effects on Gene and Transposon Expression in a Hybrid Dysgenic Syndrome of D virilis. PLoS Genet. 2015 Aug;11(8):e1005332. PubMed PMID: 26241928; PubMed Central PMCID: PMC4524669.

5.  Frau R, Abbiati F, Bini V, Casti A, Caruso D, Devoto P, Bortolato M. Targeting neurosteroid synthesis as a therapy for schizophrenia-related alterations induced by early psychosocial stress. Schizophr Res.2015 Nov;168(3):640-8. PubMed PMID: 25999042; PubMed Central PMCID: PMC4628592.

6.  Frau R, Mosher LJ, Bini V, Pillolla G, Pes R, Saba P, Fanni S, Devoto P, Bortolato M. The neurosteroidogenic enzyme 5α-reductase modulates the role of D1 dopamine receptors in rat sensorimotor gating. Psychoneuroendocrinology.2016 Jan;63:59-67. PubMed PMID: 26415119; PubMed Central PMCID: PMC4695380.

7.  Grismer JL, Schulte JA 2nd, Alexander A, Wagner P, Travers SL, Buehler MD, Welton LJ, Brown RM. The Eurasian invasion: phylogenomic data reveal multiple Southeast Asian origins for Indian Dragon Lizards. BMC Evol Biol.2016 Feb 19;16:43. PubMed PMID: 26896057; PubMed Central PMCID: PMC4759850.

8.  Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ. The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat Commun.2016 Apr 22;7:11370. PubMed PMID: 27102219; PubMed Central PMCID: PMC4844696.

9.  Hasan A, Khattab A, Islam MA, Hweij KA, Zeitouny J, Waters R, Sayegh M, Hossain M, Paul A. Injectable Hydrogels for Cardiac Tissue Repair after Myocardial Infarction. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2015 November;2(11):1500122. PubMed PMID: 27668147; PubMed Central PMCID: PMC5033116.

10.  Hasan A, Paul A, Memic A, Khademhosseini A. A multilayered microfluidic blood vessellike structure. Biomed Microdevices. 2015 Oct;17(5):88. PubMed PMID: 26256481; PubMed Central PMCID: PMC4890640.

11.  Hymel D, Cai S, Sun Q, Henkhaus RS, Perera C, Peterson BR. Fluorescent mimics of cholesterol that rapidly bind surfaces of living mammalian cells. Chem Commun (Camb). 2015 Oct 7;51(78):14624-7. PubMed PMID: 26287483; PubMed Central PMCID: PMC4620717.

12.  Josephson MP, Chai Y, Ou G, Lundquist EA. EGL-20/Wnt and MAB-5/Hox Act Sequentially to Inhibit Anterior Migration of Neuroblasts in C elegans. PLoS One.2016;11(2):e0148658. PubMed PMID: 26863303; PubMed Central PMCID: PMC4749177.

13.  Kaplan SV, Limbocker RA, Divis JL, Osterhaus GL, Newby MD, Newman BD, Mathews TA, Johnson MA. Impaired Brain Dopamine and Serotonin Release and Uptake in Wistar Rats Following Treatment with Carboplatin. ACS Chem. Neurosci.2016, 7(6):689-699. PubMed PMID: 27145395; PubMed Central PMCID: PMC4911621.

14.  Ma J, Pan P, Anyika M, Blagg BS, Dobrowsky RT. Modulating Molecular Chaperones Improves Mitochondrial Bioenergetics and Decreases the Inflammatory Transcriptome in Diabetic Sensory Neurons. ACS Chem Neurosci.2015 Sep 16;6(9):1637-48. PubMed PMID: 26161583; PubMed Central PMCID: PMC4573952.

15.  McGill JL, Nair AD, Cheng C, Rusk RA, Jaworski DC, Ganta RR. Vaccination with an Attenuated Mutant of Ehrlichia chaffeensis Induces Pathogen-Specific CD4+ T Cell Immunity and Protection from Tick-Transmitted Wild-Type Challenge in the Canine Host. PLoS One. 2016;11(2):e0148229. PubMed PMID: 26841025; PubMed Central PMCID: PMC4739596.

16.  McGill JL, Rusk RA, Guerra-Maupome M, Briggs RE, Sacco RE. Bovine Gamma Delta T Cells Contribute to Exacerbated IL-17 Production in Response to Co-Infection with Bovine RSV and Mannheimia haemolytica. PLoS One. 2016;11(3):e0151083. PubMed PMID: 26942409; PubMed Central PMCID: PMC4778910.

17.  Meinig JM, Fu L, Peterson BR. Synthesis of Fluorophores that Target Small Molecules to the Endoplasmic Reticulum of Living Mammalian Cells. Angew Chem Int Ed Engl.2015 Aug 10;54(33):9696-9. PubMed PMID: 26118368; PubMed Central PMCID: PMC4539238.

18.  Miller DE, Smith CB, Yeganeh Kazemi N, Cockrell AJ, Arvanitakis AV, Blumenstiel JP, Jaspersen SL, Hawley RS. Whole-Genome Analysis of Individual Meiotic Events in Drosophila melanogaster Reveals that Noncrossover Gene Conversions are Insensitive to Interference and the Centromere Effect. Genetics. 2016 May;203(1):159-71. PubMed PMID: 26944917; PubMed Central PMCID: PMC4858771.

19.  Oborny NJ, Costa EE, Suntornsuk L, Abreu FC, Lunte SM. Evaluation of a Portable Microchip Electrophoresis Fluorescence Detection System for the Analysis of Amino Acid Neurotransmitters in Brain Dialysis Samples. Anal Sci.2016;32(1):35-40. PubMed PMID: 26753703; PubMed Central PMCID: PMC4875779.

20.  Paul A, Manoharan V, Krafft D, Assmann A, Uquillas JA, Shin SR, Hasan A, Hussain MA, Memic A, Gaharwar AK, Khademhosseini A. Nanoengineered biomimetic hydrogels for guiding human stem cell osteogenesis in three dimensional microenvironments. J. Mater. Chem. B. 2016; 4(20):3544-3554. PubMed PMID: 27525102; PubMed Central PMCID: PMC4980085.

21.  Saylor RA, Reid EA,Lunte SM. Microchip electrophoresis with electrochemical detection for the determination of analytes in the dopamine metabolic pathway. Electrophoresis. 2015 Aug;36(16):1912-9. PubMed PMID: 25958983; PubMed Central PMCID: PMC4875780.

22.  Schwieterman AA, Steves AN, Yee V, Donelson CJ, Bentley MR, Santorella EM, Mehlenbacher TV, Pital A, Howard AM, Wilson MR, Ereddia DE, Effrein KS, McMurry JL, Ackley BD, Chisholm AD, Hudson ML. The Caenorhabditis elegans Ephrin EFN-4 Functions Non-cell Autonomously with Heparan Sulfate Proteoglycans to Promote Axon Outgrowth and Branching. Genetics. 2016 Feb;202(2):639-60. PubMed PMID: 26645816; PubMed Central PMCID: PMC4788240.

23.  Shang Y, Zeng Y, Zeng Y. Integrated Microfluidic Lectin Barcode Platform for High-Performance Focused Glycomic Profiling. Sci Rep. 2016 Feb 2;6:20297. PubMed PMID: 26831207; PubMed Central PMCID: PMC4735825.

24.  Smalley NE, An D, Parsek MR, Chandler JR, Dandekar AA. Quorum Sensing Protects Pseudomonas aeruginosa against Cheating by Other Species in a Laboratory Coculture Model. J. Bacteriol.2015 Oct;197(19):3154-9. PubMed PMID: 26195596; PubMed Central PMCID: PMC4560282.

25.  Truong TT, Seyedsayamdost M, Greenberg EP, Chandler JR. A Burkholderia thailandensis Acyl-Homoserine Lactone-Independent Orphan LuxR Homolog That Activates Production of the Cytotoxin Malleilactone. J. Bacteriol.2015 Nov;197(21):3456-62. PubMed PMID: 26283771; PubMed Central PMCID: PMC4621068.

26.  Wang X, Hinshaw KC, Macdonald SJ, Chandler JR. Draft Genome Sequence of Chromobacterium violaceum Strain CV017. Genome Announc.2016 Mar 3;4(2) PubMed PMID: 26941151; PubMed Central PMCID: PMC4777762.

27.  Wang Y, Southard KM, Zeng Y. Digital PCR using micropatterned superporous absorbent array chips. Analyst.2016 Mar 24; PubMed PMID: 27010726; PubMed Central PMCID: PMC4899130.

28.  Waters WR, Maggioli MF, Palmer MV, Thacker TC, McGill JL, Vordermeier HM, Berney-Meyer L, Jacobs WR Jr, Larsen MH. Interleukin-17A as a Biomarker for Bovine Tuberculosis. Clin Vaccine Immunol.2015 Dec 16;23(2):168-80. PubMed PMID: 26677202; PubMed Central PMCID: PMC4744917.

29.  Waters R, Pacelli S, Maloney R, Medhi I, Ahmed RP,Paul A. Stem cell secretome-rich nanoclay hydrogel: a dual action therapy for cardiovascular regeneration. Nanoscale. 2016 Mar 31;8(14):7371-6. PubMed PMID: 26876936; PubMed Central PMCID: PMC4863075.

30.  Whitlow J, Pacelli S, Paul A. Polymeric nanohybrids as a new class of therapeutic biotransporters. Macromol. Chem. Phys. 2016 Jun; 217(11): 1245-1259. Epub 2016 Apr 26. PubMed PMID: 29151704; PubMed Central PMCID: PMC5693378.

31.  Wiley EO, Fuiten AM, Doosey, MH, Lohman BK, Merkes, C, Azuma, M. The Caudal Skeleton of the Zebrafish, Danio rerio, from a Phylogenetic Perspective: A Polyural Interpretation of Homologous Structures. Copeia2015 103(4): 740-50. PubMed PMID: 28250540; PubMed Central PMCID: PMC5328193.

32.  Zhao Z, Yang Y, Zeng Y, He M. A microfluidic ExoSearch chip for multiplexed exosome detection towards blood-based ovarian cancer diagnosis. Lab Chip.2016 Jan 26;16(3):489-96. PubMed PMID: 26645590; PubMed Central PMCID: PMC4729647.

1.  Ackley BD. Wnt-signaling and planar cell polarity genes regulate axon guidance along the anteroposterior axis in C elegans. Dev Neurobiol. 2014 Aug;74(8):781-96. PubMed PMID: 24214205; PubMed Central PMCID: PMC4167394.

2.  Alhakamy NA, Elandaloussi I, Ghazvini S, Berkland CJ, Dhar P. Effect of lipid headgroup charge and pH on the stability and membrane insertion potential of calcium condensed gene complexes. Langmuir.2015 Apr 14;31(14):4232-45. doi: 10.1021/la504970n. Epub 2015 Mar 30. PubMed PMID: 25768428. PubMed Central PMCID: PMC5704962.

3.  Chakraborty A, Mucci NJ, Tan ML, Steckley A, Zhang T, Forrest ML, Dhar P. Phospholipid composition modulates carbon nanodiamond-induced alterations in phospholipid domain formation. Langmuir. 2015 May 12;31(18):5093-104. PubMed PMID: 25876023; PubMed Central PMCID: PMC4702515.

4.  Frau R, Bini V, Pillolla G, Malherbe P, Pardu A, Thomas AW, Devoto P, Bortolato M. Positive allosteric modulation of GABAB receptors ameliorates sensorimotor gating in rodent models. CNS Neurosci Ther.2014 Jul;20(7):679-84. PubMed PMID: 24703381; PubMed Central PMCID: PMC4062587.

5.  Ghazvini S, Ricke B, Zasadzinski JA, Dhar P. Monitoring phases and phase transitions in phosphatidylethanolamine monolayers using active interfacial microrheology. Soft Matter.2015 Apr 22;11(17):3313-21. PubMed PMID: 25782993; PubMed Central PMCID: PMC4408260.

6.  Godar SC, Mosher LJ, Di Giovanni G,Bortolato M. Animal models of tic disorders: a translational perspective. J Neurosci Methods. 2014 Dec 30;238:54-69. PubMed PMID: 25244952; PubMed Central PMCID: PMC4345166.

7.  Gunasekara DB, Siegel JM, Caruso G, Hulvey MK, Lunte SM. Microchip electrophoresis with amperometric detection method for profiling cellular nitrosative stress markers. Analyst. 2014 Jul 7;139(13):3265-73. PubMed PMID: 24728039; PubMed Central PMCID: PMC4084785.

8.  Hartin SN, Hudson ML, Yingling C, Ackley BD. A Synthetic Lethal Screen Identifies a Role for Lin-44/Wnt in C. elegans Embryogenesis. PLoS One. 2015 May 4; 10(5):e0121397. PubMed PMID: 25938228; PubMed Central PMCID: PMC4418752.

9.  He M, Crow J, Roth M,Zeng Y, Godwin AK. Integrated immunoisolation and protein analysis of circulating exosomes using microfluidic technology. Lab Chip.2014 Oct 7;14(19):3773-80. PubMed PMID: 25099143; PubMed Central PMCID: PMC4161194.

10.  Meinig JM, Peterson BR. Anticancer/antiviral agent Akt inhibitor-IV massively accumulates in mitochondria and potently disrupts cellular bioenergetics. ACS Chem Biol.2015 Feb 20;10(2):570-6. PubMed PMID: 25415586; PubMed Central PMCID: PMC4340353.

11.  Meneses D, Gunasekara DB, Pichetsurnthorn P, da Silva JA, de Abreu FC, Lunte SM. Evaluation of in-channel amperometric detection using a dual-channel microchip electrophoresis device and a two-electrode potentiostat for reverse polarity separations. Electrophoresis. 2015 Feb;36(3):441-8. PubMed PMID: 25256669; PubMed Central PMCID: PMC4433753.

12.  Merkes C, Turkalo TK, Wilder N, Park H, Wenger LW, Lewin SJ, Azuma M. Ewing sarcoma ewsa protein regulates chondrogenesis of Meckel's cartilage through modulation of Sox9 in zebrafish. PLoS One.2015;10(1):e0116627. PubMed PMID: 25617839; PubMed Central PMCID: PMC4305327.

13.  Paul A. Nanocomposite hydrogels: an emerging biomimetic platform for myocardial therapy and tissue engineering. Nanomedicine (Lond). 2015 May;10(9):1371-4. PubMed PMID: 25996115; PubMed Central PMCID: PMC4854277.

14.  Scott DE, Willis SD, Gabbert S, Johnson D, Naylor E, Janle EM, Krichevsky JE, Lunte CE, Lunte SM. Development of an on-animal separation-based sensor for monitoring drug metabolism in freely roaming sheep. Analyst. 2015 Feb 20;PubMed PMID: 25697221; PubMed Central PMCID: PMC4437826.

15.  Shin M, Kaplan SV, Raider KD, Johnson MA. Simultaneous measurement and quantitation of 4-hydroxyphenylacetic acid and dopamine with fast-scan cyclic voltammetry. Analyst.2015 May 7;140(9):3039-47. PubMed PMID: 25785694; PubMed Central PMCID: PMC4507372.

16.  Sun M, Johnson MA. Measurement of total antioxidant capacity in sub-μL blood samples using craft paper-based analytical devices. RSC Advances.2015, 5(69):55633-55639. PubMed Central PMCID: PMC5026239.

17.  Sundarajan L, Norris ML, Lundquist EA. SDN-1/Syndecan Acts in Parallel to the Transmembrane Molecule MIG-13 to Promote Anterior Neuroblast Migration. G3 (Bethesda). 2015 May 28;5(8):1567-74. PubMed PMID: 26022293; PubMed Central PMCID: PMC4528313.

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