Publications

1. Childers K, Freed IM, Hupert ML, Shaw B, Larsen N, Herring P, Norton JH, Shiri F, Vun J, August KJ, Witek MA, Soper SA. Novel thermoplastic microvalves based on an elastomeric cyclic olefin copolymer. Lab Chip.2024 Sep 10;24(18):4422-4439. doi: 10.1039/d4lc00501e. PMC11339931.
2. De Silva M, Opallage PM, Dunn RC. Investigation of induced electroosmotic flow in small-scale capillary electrophoresis devices: Strategies for control and reversal. Electrophoresis.2024 Oct;45(19-20):1764-1774. doi: 10.1002/elps.202400107. Epub 2024 Jul 25. PMC11502244.
3. De Silva Mohotti N, Kobayashi H, Williams JM, Binjawadagi R, Evertsen MP, Christ EG, Hartley MD. Lipidomic Analysis Reveals Differences in the Extent of Remyelination in the Brain and Spinal Cord. J. Proteome Res.2024 Aug 2;23(8):2830-2844. doi: 10.1021/acs.jproteome.3c00443. Epub 2023 Nov 29. PMC11133230.
4. Gyllenhaal EF, Brady SS, DeCicco LH, Naikatini A, Hime PM, Manthey JD, Kelly J, Moyle RG, Andersen MJ. Waves of Colonization and Gene Flow in a Great Speciator. bioRxiv [Preprint]. 2024 Jul 22:2024.07.18.603796. doi: 10.1101/2024.07.603796. PMC11291091.
5. Jin Y, Basu S, Feng M, Ning Y, Munasinghe I, Joachim AM, Li J, Qin L, Madden R, Burks H, Gao P, Wu JQ, Sheikh SW, Joice AC, Perera C, Werbovetz KA, Zhang K, Wang MZ. CYP5122A1 encodes an essential sterol C4-methyl oxidase in Leishmania donovani and determines the antileishmanial activity of antifungal azoles. Nat Commun. 2024 Oct 31;15(1):9409. doi: 10.1038/s41467-024-53790-5. PMC11528044.
6. Kurfman EA, Mora MF, Willis PA, Lunte SM. Development of capillary electrophoresis methods for the detection of microbial metabolites on potential future spaceflight missions. Electrophoresis.2024 Oct;45(19-20):1684-1691. doi: 10.1002/elps.202400073. Epub 2024 Jun 26. PMC11502272.
7. Mandal GH, Kelley SP, Sathyamoorthi S. Enantioselective Total Syntheses of (+)-Kasugamycin and (+)-Kasuganobiosamine Highlighting a Sulfamate-Tethered Aza-Wacker Cyclization Strategy. Org Lett.2024 Jul 5;26(26):5463-5466. doi: 10.1021/acs.orglett.4c01726. Epub 2024 Jun 21. PMC11226349.
8. Sperstad PD, Holmstrom ED. Conformational dynamics of the hepatitis C virus 3'X RNA. RNA.2024 Aug 16;30(9):1151-1163. doi: 10.1261/rna.079983.124. PMC11331413.
9. Witek MA, Larkey NE, Bartakova A, Hupert ML, Mog S, Cronin JK, Vun J, August KJ, Soper SA. Microfluidic Affinity Selection of B-Lineage Cells from Peripheral Blood for Minimal Residual Disease Monitoring in Pediatric B-Type Acute Lymphoblastic Leukemia Patients. Int J Mol Sci. 2024 Oct 2;25(19):10619. doi: 10.3390/ijms251910619. PMC11477226.

1. Alexander A, Robbins MB, Holmes J, Moyle RG, Peterson AT. Limited movement of an avian hybrid zone in relation to regional variation in magnitude of climate change. Mol Ecol. 2022 Dec;31(24):6634-6648. doi: 10.1111/mec.16727. Epub 2022 Oct 21. PMID: 36210655; PMCID: PMC9729445.
2. Alhammad YM, Parthasarathy S, Ghimire R, O'Connor JJ, Kerr CM, Pfannenstiel JJ, Chanda D, Miller CA, Unckless RL, Zuniga S, Enjuanes L, More S, Channappanavar R, Fehr AR. SARS-CoV-2 Mac1 is required for IFN antagonism and efficient virus replication in mice. bioRxiv. 2023 Apr 6:2023.04.06.535927. doi: 10.1101/2023.04.06.535927. Preprint. PMC10104158
3. Hettiarachchi P, Johnson MA. Characterization of D3 Autoreceptor Function in Whole Zebrafish Brain with Fast-Scan Cyclic Voltammetry. ACS Chem Neurosci. 2022 Oct 5;13(19):2863-2873. doi: 10.1021/acschemneuro.2c00280. Epub 2022 Sep 13. PMID: 36099546; PMCID: PMC10105970.
4. Hettiarachchi P, Niyangoda SS, Jarosova R, Johnson MA. Dopamine Release Impairments Accompany Locomotor and Cognitive Deficiencies in Rotenone-Treated Parkinson's Disease Model Zebrafish. Chem Res Toxicol. 2022 Nov 21;35(11):1974-1982. doi: 10.1021/acs.chemrestox.2c00150. Epub 2022 Sep 30. PMID: 36178476; PMCID: PMC10127151.
5. Jarosova R, Woolfolk SK, Martinez-Rivera N, Jaeschke MW, Rosa-Molinar E, Tamerler C, Johnson MA. Spatiotemporal Imaging of Zinc Ions in Zebrafish Live Brain Tissue Enabled by Fluorescent Bionanoprobes. Molecules. 2023 Feb 28;28(5):2260. PMID: 36903504; PMCID: PMC10005619.
6. Lou H, Hageman MJ. Development of Drug Release Model for Suspensions in ESCAR (Emulator of SubCutaneous Absorption and Release). AAPS J. 2023 Mar 22;25(3):29. doi: /10.1208/s12248-023-00799-1. PMID: 36949301; PMCID: PMC10184886.
7. Mahadik SS, Burt EK, Lundquist EA. SRC-1 controls growth cone polarity and protrusion with the UNC-6/Netrin receptor UNC-5 in Caenorhabditis elegans. bioRxiv [Preprint]. 2023 May 20:2023.05.20.541322. doi: 10.1101/2023.05.20.541322. PMID: 37292733; PMCID: PMC10245697.
8. Mahadik SS, Lundquist EA. A short isoform of the UNC-6/Netrin receptor UNC-5 is required for growth cone polarity and robust growth cone protrusion in Caenorhabditis elegans. bioRxiv [Preprint]. 2023 May 3:2023.05.02.539117. doi: 10.1101/2023.05.02.539117. PMID: 37205526; PMCID: PMC10187218.
9. Privitera A, Cardaci V, Weerasekara D, Saab MW, Diolosà L, Fidilio A, Jolivet RB, Lazzarino G, Amorini AM, Camarda M, Lunte SM, Caraci F, Caruso G. Microfluidic/HPLC combination to study carnosine protective activity on challenged human microglia: Focus on oxidative stress and energy metabolism. Front Pharmacol.2023 Mar 29;14:1161794. doi: 10.3389/fphar.2023.1161794. PMID: 37063279; PMCID: PMC10095171.

1. Abisado-Duque RG, Townsend KA, Mckee BM, Woods K, Koirala P, Holder AJ, Craddock VD, Cabeen M, Chandler JR. An Amino Acid Substitution in Elongation Factor EF-G1A Alters the Antibiotic Susceptibility of Pseudomonas aeruginosa LasR-Null Mutants. J Bacteriol.2023 Jun 27;205(6):e0011423. doi: 10.1128/jb.00114-23. Epub 2023 May 16. PMID: 37191503; PMCID: PMC10294626.
2. Abisado-Duque RG, McKee BM, Townsend KA, Woods K, Koirala P, Holder AJ, Craddock VD, Cabeen MT, Chandler JR. Tobramycin adaptation alters the antibiotic susceptibility of Pseudomonas aeruginosa quorum sensing-null mutants. bioRxiv [Preprint]. 2023 Mar 19:2023.01.13.523864. doi: 10.1101/2023.01.13.523864. Update in: J Bacteriol. 2023 May 16;:e0011423. PMID: 36711731; PMCID: PMC9882136.
3. Alexander A, Robbins MB, Holmes J, Moyle RG, Peterson AT. Limited movement of an avian hybrid zone in relation to regional variation in magnitude of climate change. Mol Ecol. 2022 Dec;31(24):6634-6648. doi: 10.1111/mec.16727. Epub 2022 Oct 21. PMID: 36210655; PMCID: PMC9729445.
4. Athapattu US, Rathnayaka C, Vaidyanathan S, Gamage SST, Choi J, Riahipour R, Manoharan A, Hall AR, Park S, Soper SA. Tailoring Thermoplastic In-Plane Nanopore Size by Thermal Fusion Bonding for the Analysis of Single Molecules. ACS Sens.2021 Aug 27;6(8):3133-3143. PMID: 34406743; PMCID: PMC8482307.
5. Bansal S, Floyd ER, Kowalski M, Aikman E, Elrod P, Burkey K, Chahla J, LaPrade RF, Maher SA, Robinson JL, Patel JM. Meniscal Repair: The Current State and Recent Advances in Augmentation. J Orthop Res.2021 Jul;39(7):1368-1382. Review. PMID: 33751642; PMCID: PMC8249336.
6. Budiardjo SJ, Stevens JJ, Calkins AL, Ikujuni AP, Wimalasena VK, Firlar E, Case DA, Biteen JS, Kaelber JT, Slusky JSG. Colicin E1 opens its hinge to plug TolC. Elife. 2022 Feb 24;11:e73297. doi: 10.7554/eLife.73297. PMID: 35199644; PMCID: PMC9020818.
7. Calle-Tobón A, Holguin-Rocha AF, Moore C, Rippee-Brooks M, Rozo-Lopez P, Harrod J, Fatehi S, Rua-Uribe GL, Park Y, Londoño-Rentería B. Blood Meals With Active and Heat-Inactivated Serum Modifies the Gene Expression and Microbiome of Aedes albopictus. Front Microbiol. 2021 Sep 9:12:724345. doi: 10.3389/fmicb.2021.724345. eCollection 2021. PMID: 34566927; PMCID: PMC8458951.
8. Chan KO, Hutter CR, Wood PL Jr., Su Y-C, Brown RM. Gene flow increases phylogenetic structure and inflates cryptic species estimations: a case study on widespread Philippine puddle frogs (Occidozyga laevis). Syst Biol. 2021 Dec 16;71:40–57. doi.org/10.1093/sysbio/syab034. PMID: 33964168
9. de Mello PLH, Hime PM, Glor RE. Transcriptomic Analysis of Skin Color in Anole Lizards. Genome Biol Evol.2021 Jul 6;13(7):evab110. PMID: 33988681; PMCID: PMC8290120.
10. Dimond ZE, Suchland RJ, Baid S, LaBrie SD, Soules KR, Stanley J, Carrell S, Kwong F, Wang Y, Rockey DD, Hybiske K, Hefty PS. Inter-species lateral gene transfer focused on the Chlamydia plasticity zone identifies loci associated with immediate cytotoxicity and inclusion stability. Mol Microbiol. 2021 Dec;116(6):1433-1448. PMID: 34738268; PMCID: PMC9119408.
11. Do N, Ackley BD, Landson P. Draft Genome Sequence of Novel Staphylococcus epidermidis Strain EVL2000, Exhibiting Pathogenicity against Caenorhabditis elegans. Microbiol Resour Announc.2022 Apr 21;11(4):e0123921. Epub 2022 Mar 14. PMID: 35286161; PMCID: PMC9022524.
12. Dorador AP, Dalikova M, Cerbin S, Stillman CM, Zych MG, Hawley RS, Miller DE, Ray DA, Funikov SY, Evgen'ev MB, Blumenstiel JP. Paramutation-like Epigenetic Conversion by piRNA at the Telomere of Drosophila virilis. Biology (Basel). 2022 Oct 9;11(10):1480. doi: 10.3390/biology11101480. PMID: 36290385; PMCID: PMC9598792.
13. Everman ER, Macdonald SJ, Kelly JK. 2023. The genetic basis of adaptation to copper pollution in Drosophila melanogaster.Front. Genet., 04 April 2023; 14:1144221. doi: 10.3389/fgene.2023.1144221. eCollection 2023. PMID: 37082199; PMCID: PMC10110907.
14. Fahad AS, Chung CY, López Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ. Cell activation-based screening of natively paired human T cell receptor repertoires. Sci Rep.2023 May 17;13(1):8011. doi: 10.1038/s41598-023-31858-4. PMID: 37198258; PMCID: PMC10192375.
15. Fahad AS, Chung CY, Lopez Acevedo SN, Boyle N, Madan B, Gutiérrez-González MF, Matus-Nicodemos R, Laflin AD, Ladi RR, Zhou J, Wolfe J, Llewellyn-Lacey S, Koup RA, Douek DC, Balfour HH Jr, Price DA, DeKosky BJ. Immortalization and functional screening of natively paired human T cell receptor repertoires. Protein Eng Des Sel. 2022 Feb 17;35:gzab034. PMID: 35174859; PMCID: PMC9005053.
16. Felmlee KR, Macdonald SJ, Everman ER. Pre-adult exposure to three heavy metals leads to changes in the head transcriptome of adult flies. MicroPubl Biol. 2022 Jul 2;2022:10.17912/micropub.biology.000591. doi: 10.17912/micropub.biology.000591. PMID: 35856016; PMCID: PMC9287740.
17. Gamage SST, Pahattuge TN, Wijerathne H, Childers K, Vaidyanathan S, Athapattu US, Zhang L, Zhao Z, Hupert ML, Muller RM, Muller-Cohn J, Dickerson J, Dufek D, Geisbrecht BV, Pathak H, Pessetto Z, Gan GN, Choi J, Park S, Godwin AK, Witek MA, Soper SA. Microfluidic affinity selection of active SARS-CoV-2 virus particles. Sci Adv. 2022 Sep 30;8(39):eabn9665. PMID: 36170362; PMCID: PMC9519043.
18. Gunawardhana SM, Holmstrom ED. Apolar chemical environments compact unfolded RNAs and can promote folding. Biophys Rep (N Y). 2021 Sep 8;1(1):100004. doi: 10.1016/j.bpr.2021.100004. Epub 2021 Jul 21. PMID: 35382036; PMCID: PMC8978554.
19. Hasan MK, El Qaidi S, McDonald P, Roy A, Hardwidge PR. Repurposing Avasimibe to Inhibit Bacterial Glycosyltransferases. Pathogens. 2022 Mar 17;11(3):370. doi: 10.3390/pathogens11030370. PMID: 35335693; PMCID: PMC8953086.
20. Hill T, Unckless RL, Perlmutter JI. Positive Selection and Horizontal Gene Transfer in the Genome of a Male-Killing Wolbachia. Mol Biol Evol.2022 Jan 7;39(1):msab303. doi: 10.1093/molbev/msab303. PMID: 34662426; PMCID: PMC8763111.
21. Hu M, Brown V, Jackson JM, Wijerathne H, Pathak H, Koestler DC, Nissen E, Hupert ML, Muller R, Godwin AK, Witek MA, Soper SA. Assessing Breast Cancer Molecular Subtypes Using Extracellular Vesicles' mRNA. Anal Chem.2023 May 16;95(19):7665-7675. doi: 10.1021/acs.analchem.3c00624. Epub 2023 Apr 18. PMID: 37071799; PMCID: PMC10243595.
22. Huang A, Groer C, Lu R, Forrest ML, Griffin JD, Berkland CJ. Glatiramer Acetate Complexed with CpG as Intratumoral Immunotherapy in Combination with Anti-PD-1. Mol Pharm. 2022 Nov 7;19(11):4357-4369. doi: 10.1021/acs.molpharmaceut.2c00730. Epub 2022 Oct 25. PMID: 36282296; PMCID in progress.
23. Huang A, Jin W, Fahad AS, Mussman BK, Nicchia GP, Madan B, de Souza MO, Griffin JD, Bennett JL, Frigeri A, Berkland CJ, DeKosky BJ. Strategies to Screen Anti-AQP4 Antibodies from Yeast Surface Display Libraries. Antibodies (Basel).2022 Jun 5;11(2):39. doi: 10.3390/antib11020039. PMID: 35735358; PMCID: PMC9220140.
24. Huynh K, Smith BR, Macdonald SJ, Long AD. Genetic variation in chromatin state across multiple tissues in Drosophila melanogaster. PLoS Genet.2023 May 5;19(5):e1010439. doi: 10.1371/journal.pgen.1010439. PMID: 37146087; PMCID: PMC10191298.
25. Jarosova R, Douglass AD, Johnson MA. Optimized Sawhorse Waveform for the Measurement of Oxytocin Release in Zebrafish. Anal Chem. 2022 Feb 15;94(6):2942-2949. doi: 10.1021/acs.analchem.1c04879. Epub 2022 Feb 2. PMID: 35107979; PMCID: PMC9087480.
26. Jarosova R, Niyangoda SS, Hettiarachchi P, Johnson MA. Impaired Dopamine Release and Latent Learning in Alzheimer's Disease Model Zebrafish. ACS Chem Neurosci.2022 Oct 5;13(19):2924-2931. doi: 10.1021/acschemneuro.2c00484. Epub 2022 Sep 16. PMID: 36113115; PMCID: PMC10127145.
27. Johnson PM, Lehtinen JM, Robinson JL. Surfactant Interactions and Solvent Phase Solubility Modulate Small Molecule Release from Emulsion Electrospun Fibers. AIChE J.2021 Dec;67(12):e17470. doi: 10.1002/aic.17470. Epub 2021 Sep 26. PMID: 36582410; PMCID: PMC9797104.
28. Kelly JK. The genomic scale of fluctuating selection in a natural plant population. Evol Lett.2022 Dec;6(6):506-521. doi: 10.1002/evl3.308. eCollection 2022 Dec. PubMed PMID: 36579169; PMCID: PMC9783439.
29. Knewtson KE, Ohl NR, Robinson JL. Estrogen Signaling Dictates Musculoskeletal Stem Cell Behavior: Sex Differences in Tissue Repair. Tissue Eng Part B Rev. 2022  Aug;28(4):789-812. PMID: 34409868; PMCID: PMC9419932.
30. Kurhade SE, Ross P, Gao FP, Farrell MP. Lectin Drug Conjugates Targeting High Mannose N-Glycans. Chembiochem. 2022 Oct 6;23(19):e202200266. Epub 2022 Jul 27. PMID: 35816406; PMCID: PMC9738879.
31. Lama J, Srivastav S, Tasnim S, Hubbard D, Hadjipanteli S, Smith BR, Macdonald SJ, Green L, Kelleher ES. Genetic variation in P-element dysgenic sterility is associated with double-strand break repair and alternative splicing of TE transcripts. PLoS Genet.2022 Dec 7;18(12):e1010080. doi: 10.1371/journal.pgen.1010080. eCollection 2022 Dec. PMID: 36477699; PMCID: PMC9762592.
32. Lansdon P, Carlson M, Ackley BD. Wild-type Caenorhabditis elegans isolates exhibit distinct gene expression profiles in response to microbial infection. BMC Genomics.2022 Mar 23;23(1):229. doi: 10.1186/s12864-022-08455-2.  PMID: 35321659; PMCID: PMC8943956.
33. Loo C, Koirala P, Smith NC, Evans KC, Benomar S, Parisi IR, Oller A, Chandler JR. Cross-species activation of hydrogen cyanide production by a promiscuous quorum-sensing receptor promotes Chromobacterium subtsugae competition in a dual-species model. Microbiology (Reading). 2023 Feb;169(2):001294. doi: 10.1099/mic.0.001294. PMID: 36790401; PMCID: PMC10197875.
34. Lou H, Hageman MJ. Development of an In Vitro System To Emulate an In Vivo Subcutaneous Environment: Small Molecule Drug Assessment. Mol Pharm.2022 Nov 7;19(11):4017-4025. doi: 10.1021/acs.molpharmaceut.2c00490. Epub 2022 Oct 24. PMID: 36279508; PMCID: PMC10228092.
35. Macdonald SJ, Cloud-Richardson KM, Sims-West DJ, Long AD. Powerful, efficient QTL mapping in Drosophila melanogaster using bulked phenotyping and pooled sequencing. Genetics. 2022 Mar 3;220(3):iyab238. PMID: 35100395; PMCID: PMC8893256.
36. Macdonald SJ, Long AD. Discovery of malathion resistance QTL in Drosophila melanogaster using a bulked phenotyping approach. G3 (Bethesda).2022 Dec 1;12(12):jkac279. doi: 10.1093/g3journal/jkac279. PMID: 36250804; PMCID: PMC9713458.
37. Mahadik SS, Lundquist EA. The PH/MyTH4/FERM molecule MAX-1 inhibits UNC-5 activity in the regulation of VD growth cone protrusion in Caenorhabditis elegans. Genetics. 2022 May 5;221(1):iyac047. doi: 10.1093/genetics/iyac047. PMID: 35348689; PMCID: PMC9071540.
38. Mahadik SS, Lundquist EA. TOM-1/tomosyn acts with the UNC-6/netrin receptor UNC-5 to inhibit growth cone protrusion in Caenorhabditis elegans. Development.2023 Apr 1;150(7). doi: 10.1242/dev.201031. Epub 2023 Apr 4. PMID: 37014062; PMCID: PMC10112904.
39. Maza N, Wang D, Kowalski C, Stoveken HM, Dao M, Sial OK, Giles AC, Grill B, Martemyanov KA. Ptchd1 mediates opioid tolerance via cholesterol-dependent effects on μ-opioid receptor trafficking. Nat Neurosci.2022 Sep;25(9):1179-1190. doi: 10.1038/s41593-022-01135-0. Epub 2022 Aug 18. PMID: 35982154; PMCID: PMC10294603.
40. Miller DE, Dorador AP, Van Vaerenberghe K, Li A, Grantham EK, Cerbin S, Cummings C, Barragan M, Egidy RR, Scott AR, Hall KE, Perera A, Gilliland WD, Hawley RS, Blumenstiel JP. Off-target piRNA gene silencing in Drosophila melanogaster rescued by a transposable element insertion. PLoS Genet. 2023 Feb;19(2):e1010598. doi: 10.1371/journal.pgen.1010598. eCollection 2023 Feb. PMID: 36809339; PMCID: PMC9983838.
41. Neupane S, Davis T, Nayduch D, McGregor BL. Habitat type and host grazing regimen influence the soil microbial diversity and communities within potential biting midge larval habitats. Environ Microbiome.2023 Jan 19;18(1):5. doi: 10.1186/s40793-022-00456-8. PMID: 36658608; PMCID: PMC9854200.
42. Ochs ME, McWhirter RM, Unckless RL, Miller DM 3rd, Lundquist EA. Caenorhabditis elegans ETR-1/CELF has broad effects on the muscle cell transcriptome, including genes that regulate translation and neuroblast migration. BMC Genomics. 2022 Jan 6;23(1):13. doi: 10.1186/s12864-021-08217-6. PMID: 34986795; PMCID: PMC8734324.
43. Olajiga OM, Maldonado-Ruiz LP, Fatehi S, Cardenas JC, Gonzalez MU, Gutierrez-Silva LY, Londono-Renteria B, Park Y. Association of dengue infection with anti-alpha-gal antibodies, IgM, IgG, IgG1, and IgG2. Front Immunol.2022 Oct 14;13:1021016. doi: 10.3389/fimmu.2022.1021016. eCollection 2022. PMID: 36311743; PMCID: PMC9614307.
44. Parthasarathy S, Wang X, Carr KR, Varahan S, Hancock EB, Hancock LE. SigV Mediates Lysozyme Resistance in Enterococcus faecalis via RsiV and PgdA. J Bacteriol.2021 Sep 23;203(20):e0025821. PMID: 34370556; PMCID: PMC8459761.
45. Tapondjou Nkonmeneck WP, Allen KE, Hime PM, Knipp KN, Kameni MM, Tchassem AM, Gonwouo LN, Brown RM. Diversification and historical demography of Rhampholeon spectrum in West-Central Africa. PLoS One.2022;17(12):e0277107. doi: 10.1371/journal.pone.0277107. eCollection 2022. PMID: 36525408; PMCID: PMC9757597.
46. Tucker DK, Adams CS, Prasad G, Ackley BD. The Immunoglobulin Superfamily Members syg-2 and syg-1 Regulate Neurite Development in C. elegans. J Dev Biol.2022 Jan 9;10(1):3. doi: 10.3390/jdb10010003. PMID: 35076532; PMCID: PMC8788504.
47. Vaidyanathan S, Gamage S, Dathathreya K, Kryk R, Manoharan A, Zhao Z, Zhang L, Choi J, Park D, Park S, Soper SA. Fluidic operation of a polymer-based nanosensor chip for analysing single molecules. Flow (Camb). 2022; 2:E14. doi: 10.1017/flo.2022.8. Epub 2022 Jun 27. PMID: 35936867; PMCID: PMC9356744.
48. Vaidyanathan S, Wijerathne H, Gamage SST, Shiri F, Zhao Z, Choi J, Park S, Witek MA, McKinney C, Verber M, Hall AR, Childers K, McNickle T, Mog S, Yeh E, Godwin AK, Soper SA. High Sensitivity Extended Nano-Coulter Counter for Detection of Viral Particles and Extracellular Vesicles. Anal Chem.2023 Jul 4;95(26):9892-9900. doi: 10.1021/acs.analchem.3c00855. Epub 2023 Jun 19. PMID: 37336762.
49. van der Vlies AJ, Ghasemi M, Adair BM, Adair JH, Gomez ED, Hasegawa U. Reactive Oxygen Species-Triggered Hydrogen Sulfide Release and Cancer-Selective Antiproliferative Effect of Anethole Dithiolethione-Containing Polymeric Micelles. Adv Healthc Mater. 2023 Jan;12(6):e2201836. doi: 10.1002/adhm.202201836. Epub 2023 Jan 30. PMID: 36495554; PMCID: PMC10125727.
50. van der Vlies AJ, Xu J, Ghasemi M, Bator C, Bell A, Rosoff-Verbit B, Liu B, Gomez ED, Hasegawa U. Thioether-Based Polymeric Micelles with Fine-Tuned Oxidation Sensitivities for Chemotherapeutic Drug Delivery. Biomacromolecules.2022 Jan 10;23(1):77-88. doi: 10.1021/acs.biomac.1c01010. Epub 2021 Nov 11. PMID: 34762396; PMCID: PMC10232214.
51. Wagner MR, Tang C, Salvato F, Clouse KM, Bartlett A, Vintila S, Phillips L, Sermons S, Hoffmann M, Balint-Kurti PJ, Kleiner M. Microbe-dependent heterosis in maize. Natl Acad Sci U S A. 2021 Jul 27;118(30):e2021965118. doi: 10.1073/pnas.2021965118. PMID: 34285069; PMCID: PMC8325155.
52. Weerasekara DB, Lunte SM. Separation and Detection of Tyrosine and Phenylalanine-derived Oxidative Stress Biomarkers Using Microchip Electrophoresis with Electrochemical Detection. Electroanalysis.2022 Dec;34(12):1913-1927. doi: 10.1002/elan.202100580. Epub 2021 Dec 31. PMID: 37220612; PMCID: PMC10202003.
53. Zhao J, Tang Z, Selvaraju M, Johnson KA, Douglas JT, Gao PF, Petrassi HM, Wang MZ, Wang J. Cellular Target Deconvolution of Small Molecules Using a Selection-Based Genetic Screening Platform. ACS Cent Sci.2022 Oct 26;8(10):1424-1434. doi: 10.1021/acscentsci.2c00609. Epub 2022 Sep 22. PMID: 36313155; PMCID: PMC9615120.
54. Zhao Z, Vaidyanathan S, Bhanja P, Gamage S, Saha S, McKinney C, Choi J, Park S, Pahattuge T, Wijerathne H, Jackson JM, Huppert ML, Witek MA, Soper SA. In-plane Extended Nano-coulter Counter (XnCC) for the Label-free Electrical Detection of Biological Particles. Electroanalysis2022, 34(12), 1961-1975. https://doi.org/10.1002/elan.202200091. PMC10399599

1. Abisado RG, Kimbrough JH, McKee BM, Craddock VD, Smalley NE, Dandekar AA, Chandler JR. Tobramycin Adaptation Enhances Policing of Social Cheaters in Pseudomonas aeruginosa. Appl Environ Microbiol.2021 May 26;87(12):e0002921. PubMed PMID: 33837019; PubMed Central PMCID: PMC8174604.
2. Aquino-Nunez W, Mielko ZE, Dunn T, Santorella EM, Hosea C, Leitner L, McCalla D, Simms C, Verola WM, Vijaykumar S, Hudson ML. cnd-1/NeuroD1 Functions with the Homeobox Gene ceh-5/Vax2 and Hox Gene ceh-13/labial To Specify Aspects of RME and DD Neuron Fate in Caenorhabditis elegans. G3 (Bethesda). 2020 Sep 2;10(9):3071-3085. PubMed PMID: 32601060; PubMed Central PMCID: PMC7466980.
3. Amarasekara CA, Athapattu US, Rathnayaka C, Choi J, Park S, Soper SA. Open-tubular nanoelectrochromatography (OT-NEC): gel-free separation of single stranded DNAs (ssDNAs) in thermoplastic nanochannels. Electrophoresis. 2020 Oct;41(18-19):1627-1640. doi: 10.1002/elps.202000109. Epub 2020 Aug 7. PubMed PMID: 33460211; PubMed Central PMCID: PMC8107830.
4. Amarasekara CA, Rathnayaka C, Athapattu US, Zhang L, Choi J, Park S, Nagel AC, Soper SA. Electrokinetic identification of ribonucleotide monophosphates (rNMPs) using thermoplastic nanochannels. J Chromatogr A.2021 Feb 8;1638:461892. PubMed PMID: 33477027; PubMed Central PMCID: PMC8107831.
5. Athapattu US, Amarasekara CA, Immel JR, Bloom S, Barany F, Nagel AC, Soper SA. Solid-phase XRN1 reactions for RNA cleavage: application in single-molecule sequencing. Nucleic Acids Res. 2021 Apr 19;49(7):e41. PubMed PMID: 33511416; PubMed Central PMCID: PMC8053086.
6. Badowski ME, Britt N, Huesgen EC, Lewis MM, Miller MM, Nowak K, Sherman E, Smith RO. Pharmacotherapy considerations in transgender individuals living with human immunodeficiency virus. Pharmacotherapy.2021 March;41(3):299-314. PubMed PMID: 33404067; PubMed Central PMCID: PMC8128446.
7. Banach BB, Cerutti G, Fahad AS, Shen CH, de Souza MO, Katsamba PS, Tsybovsky Y, Wang P, Nair MS, Huang Y, Urdániz IMF, Steiner PJ, Gutiérrez-González M, Liu L, López Acevedo SN, Nazzari A, Wolfe JR, Luo Y, Olia AS, Teng IT, Yu J, Zhou T, Reddem ER, Bimela J, Pan X, Madan B, Laflin AD, Nimrania R, Yuen KT, Whitehead TA, Ho DD, Kwong PD, Shapiro L, DeKosky BJ. Paired heavy and light chain signatures contribute to potent SARS-CoV-2 neutralization in public antibody responses. bioRxiv.2021 Jan 3; doi: 10.1101/2020.12.31.424987. PubMed PMID: 33442681; PubMed Central PMCID: PMC7805438.
8. Budiardjo SJ, Ikujuni AP, Firlar E, Cordova A, Kaelber JT, Slusky JSG. High-Yield Preparation of Outer Membrane Protein Efflux Pumps by in Vitro Refolding is Concentration Dependent. J Membr Biol. 2021 Jan 19; doi: 10.1007/s00232-020-00161-y. [Epub ahead of print] PubMed PMID: 33462665.; PubMed Central PMCID: PMC8101038.
9. Campillo LC, Manthey JD, Thomson RC, Hosner PA, Moyle RG. Genomic differentiation in an endemic Philippine genus (Aves: Sarcophanops) owing to geographical isolation on recently disassociated islands. Biol J Linn Soc Lond.2020 Oct 21;131(4):814-821. doi: 10.1093/biolinnean/blaa143. eCollection 2020 Dec. PMID: 34690487; PubMed Central PMCID: PMC8528567.
10. Caruso G, Fresta CG, Costantino A, Lazzarino G, Amorini AM, Lazzarino G, Tavazzi B, Lunte SL, Dhar P, Gulisano M, Caraci F. Lung Surfactant Decreases Biochemical Alterations and Oxidative Stress Induced by a Sub-Toxic Concentration of Carbon Nanoparticles in Alveolar Epithelial and Microglial Cells. Int. J. Mol. Sci.2021, 22(5), 2694. PubMed PMID: 33800016; PubMed Central PMCID: PMC7962095.
11. Chen JJY, van der Vlies AJ, Hasegawa U. Hydrogen sulfide-releasing micelles for promoting angiogenesis. Polym Chem. 2020 July 21;11:4454-4463. PubMed PMID: 33796157; PubMed Central PMCID: PMC8009299.
12. Christopher MA, Johnson SN, Griffin JD, Berkland CJ. Autoantigen Tetramer Silences Autoreactive B Cell Populations. Mol Pharm.2020 Nov 2;17(11):4201-4211. PubMed PMID: 32903002; PubMed Central PMCID: PMC7606775.
13. Delavaux CS, Schemanski JL, House GL, Tipton AG, Sikes B, Bever JD. Root pathogen diversity and composition varies with climate in undisturbed grasslands, but less so in anthropogenically disturbed grasslands. ISME J.2021 Jan;15(1):304-317. Epub 2020 Sep 21. PubMed PMID: 32958849; PubMed Central PMCID: PMC7852655.
14. Dimond ZE, Hefty PS. Comprehensive genome analysis and comparisons of the swine pathogen, Chlamydia suis reveals unique ORFs and candidate host-specificity factors. Pathog Dis.2021 Mar; 79(2): ftaa035. Published online 2020 Jul 8. doi: 10.1093/femspd/ftaa035. PMID: 32639528; PubMed Central PMCID: PMC7948067.
15. Everman ER, Cloud-Richardson KM, Macdonald SJ. Characterizing the genetic basis of copper toxicity in Drosophila reveals a complex pattern of allelic, regulatory, and behavioral variation. Genetics.2021 March 3;217(1):1-20. PubMed PMID: 33683361; PubMed Central PMCID: PMC8045719.
16. Fahad AS, Timm MR, Madan B, Burgomaster KE, Dowd KA, Normandin E, Gutiérrez-González MF, Pennington JM, De Souza MO, Henry AR, Laboune F, Wang L, Ambrozak DR, Gordon IJ, Douek DC, Ledgerwood JE, Graham BS, Castilho LR, Pierson TC, Mascola JR, DeKosky BJ. Functional Profiling of Antibody Immune Repertoires in Convalescent Zika Virus Disease Patients. Front Immunol.2021;12:615102. PubMed PMID: 33732238; PubMed Central PMCID: PMC7959826.
17. Groer C, Zhang T, Lu R, Cai S, Mull D, Huang A, Forrest M, Berkland C, Aires D, Forrest ML. Intratumoral Cancer Chemotherapy with a Carrier-Based Immunogenic Cell-Death Eliciting Platinum (IV) Agent. Mol Pharm. 2020 Nov 2;17(11):4334-4345. Epub 2020 Oct 8. PubMed PMID: 32975949; PubMed Central PMCID: PMC8200829.
18. Hill T, Unckless RL. Adaptation, ancestral variation and gene flow in a 'Sky Island' Drosophila species. Mol Ecol. 2021 Jan;30(1):83-99. doi: 10.1111/mec.15701. Epub 2020 Nov 7. PubMed PMID: 33089581; PubMed Central PMCID: PMC7945764.
19. Hill T, Unckless RL. Recurrent evolution of high virulence in isolated populations of a DNA virus. Elife. 2020 Oct 28;9:e58931.doi: 10.7554/eLife.58931. PubMed PMID: 33112738; PubMed Central ID: PMC7685711.
20. Hill T, Unckless RL, Perlmutter JI. Rapid evolution and horizontal gene transfer in the genome of a male-killing Wolbachia. bioRxiv2020.11.16.385294; doi: https://doi.org/10.1101/2020.11.16.385294.
21. Ingham DJ, Blankenfeld BR, Chacko S, Perera C, Oakley BR, Gamblin TC. Fungally Derived Isoquinoline Demonstrates Inducer-Specific Tau Aggregation Inhibition. Biochemistry.2021 Jun 1;60(21):1658-1669. Epub 2021 May 19. PubMed PMID: 34009955; PubMed Central PMCID: PMC8173610.
22. Jarosova R, Kaplan SV, Field TM, Givens RS, Senadheera SN, Johnson MA. In Situ Electrochemical Monitoring of Caged Compound Photochemistry: An Internal Actinometer for Substrate Release. Anal Chem.2021 Feb 9;93(5):2776-2784. Epub 2021 Jan 25. PubMed PMID: 33492927; PubMed Central PMCID: PMC8177719.
23. Jin W, Madan B, Mussman BK, Hailemariam AT, Fahad AS, Wolfe JR, Kwon YD, Zhang B, Shapiro L, Kwong PD, DeKosky BJ. The covalent SNAP tag for protein display quantification and low-pH protein engineering. J Biotechnol. 2020 Aug 20;320:50-56. PubMed PMID: 32561362. PubMed Central PMCID: PMC7434562.
24. Johnson PM, Knewtson KE, Hodge JG, Lehtinen JM, Trofimoff AS, Fritz DJ, Robinson JL. Surfactant location and internal phase volume fraction dictate emulsion electrospun fiber morphology and modulate drug release and cell response. Biomater Sci. 2021 Jan 4; doi: 10.1039/d0bm01751e. [Epub ahead of print] PubMed PMID: 33393536; PubMed Central PMCID: PMC7904618.
25. Klaus JR, Majerczyk C, Moon S, Eppler NA, Smith S, Tuma E, Groleau MC, Asfahl KL, Smalley NE, Hayden HS, Piochon M, Ball P, Dandekar AA, Gauthier C, Déziel E, Chandler JR. Burkholderia thailandensis Methylated Hydroxyalkylquinolines: Biosynthesis and Antimicrobial Activity in Cocultures. Appl Environ Microbiol. 2020 Nov 24;86(24). doi: 10.1128/AEM.01452-20. Print 2020 Nov 24. PubMed PMID: 33008823; PubMed Central PMCID: PMC7688213.
26. Kurhade SE, Weiner JD, Gao FP, Farrell MP. Functionalized High Mannose-Specific Lectins for the Discovery of Type I Mannosidase Inhibitors. Angew Chem Int Ed Engl. 2021 Mar 16. [Epub ahead of print] PubMed PMID: 33728787; PubMed Central PMCID: PMC8131250.
27. Madan B, Zhang B, Xu K, Chao CW, O'Dell S, Wolfe JR, Chuang GY, Fahad AS, Geng H, Kong R, Louder MK, Nguyen TD, Rawi R, Schön A, Sheng Z, Nimrania R, Wang Y, Zhou T, Lin BC, Doria-Rose NA, Shapiro L, Kwong PD, DeKosky BJ. Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody. Proc Natl Acad Sci U S A. 2021 March 9;118(10). PubMed PMID: 33649208; PubMed Central PMCID: PMC7958426.
28. Mohan A, Agarwal S, Clauss M, Britt NS, Dhillon NK. Extracellular vesicles: novel communicators in lung diseases. Respir Res. 2020 Jul 8;21(1):175. PubMed PMID: 32641036; PubMed Central PMCID: PMC7341477.
29. Monnahan PJ, Colicchio J, Fishman L, Macdonald SJ, Kelly JK. Predicting evolutionary change at the DNA level in a natural Mimulus population. PLoS Genet. 2021 Jan;17(1):e1008945. doi: 10.1371/journal.pgen.1008945. eCollection 2021 Jan. PubMed PMID: 33439857; PubMed Central PMCID: PMC7837469.
30. Ochs ME, Josephson MP, Lundquist EA. The Predicted RNA-Binding Protein ETR-1/CELF1 Acts in Muscles To Regulate Neuroblast Migration in Caenorhabditis elegans. G3 (Bethesda). 2020 Jul 7;10(7):2365-2376. PubMed PMID: 32398235; PubMed Central PMCID: PMC7341121.
31. Olajiga O, Holguin-Rocha AF, Rippee-Brooks M, Eppler M, Harris SL, Londono-Renteria B. Vertebrate Responses against Arthropod Salivary Proteins and Their Therapeutic Potential. Vaccines (Basel). 2021 Apr 5;9(4). Review. PubMed PMID: 33916367; PubMed Central PMCID: PMC8066741.
32. Pahattuge TN, Freed IM, Hupert ML, Vaidyanathan S, Childers K, Witek MA, Weerakoon-Ratnayake K, Park D, Kasi A, Al-Kasspooles MF, Murphy MC, Soper SA. System Modularity Chip for Analysis of Rare Targets (SMART-Chip): Liquid Biopsy Samples. ACS Sens. 2021 May 28;6(5):1831-1839. doi: 10.1021/acssensors.0c02728. Epub 2021 May 3. PMID: 33938745; PubMed Central PMCID: PMC8325110.
33. Reynolds HS, Wagner R, Wang G, Burrill HM, Bever JD, Alexander HM. Effects of the soil microbiome on the demography of two annual prairie plants. Ecol Evol. 2020 July;10(13):6208-6222. PubMed PMID: 32724508; PubMed Central PMCID: PMC7381566.
34. Rice C, Macdonald SJ, Wang X, Ward RE. The Broad Transcription Factor Links Hormonal Signaling, Gene Expression, and Cellular Morphogenesis Events During Drosophila Imaginal Disc Development. Genetics. 2020 December;216(4):1137-1152. PubMed PMID: 33115752; PubMed Central PMCID: PMC7768262.
35. Samarasinghe TN, Zeng Y, Johnson CK. Comparison of separation modes for microchip electrophoresis of proteins. J Sep Sci.2021 Feb;44(3):744-751. Epub 2020 Dec 13. PubMed PMID: 33226183; PubMed Central PMCID: PMC8053037.
36. Samarasinghe TN, Zeng Y, Johnson CK. Microchip electrophoresis assay for calmodulin binding proteins. J Sep Sci. 2020 December; 44(4):895. PubMed PMID: 34321981; PubMed Central PMCID: PMC8312402.
37. Sanders JC, Holmstrom ED. Integrating single-molecule FRET and biomolecular simulations to study diverse interactions between nucleic acids and proteins. Essays Biochem.2021 April 16;65(1):37-49. PubMed PMID: 33600559; PubMed Central PMCID: PMC8052285.
38. Schilly KM, Gunawardhana SM, Wijesinghe MB, Lunte SM. Biological applications of microchip electrophoresis with amperometric detection: in vivo monitoring and cell analysis. Anal Bioanal Chem. 2020 Sep;412(24):6101-6119. PubMed PMID: 32347360; PubMed Central PMCID: PMC8130646.
39. Sharma R, Kk S, Holmstrom ED, Westerlund F. Real-time compaction of nanoconfined DNA by an intrinsically disordered macromolecular counterion. Biochem Biophys Res Commun.2020 Nov 26;533(1):175-180. PubMed PMID: 32951838; PubMed Central PMCID: PMC7577930.
40. Soules KR, LaBrie SD, May BH, Hefty PS. Sigma 54-Regulated Transcription Is Associated with Membrane Reorganization and Type III Secretion Effectors during Conversion to Infectious Forms of Chlamydia trachomatis. mBio. 2020 Sep 8;11(5):e01725-20. doi: 10.1128/mBio.01725-20. PubMed PMID: 32900805; PubMed Central PMCID: PMC7482065.
41. Vaidyanathan S, Weerakoon-Ratnayake KM, Uba FI, Hu B, Kaufman D, Choi J, Park S, Soper SA. Thermoplastic nanofluidic devices for identifying abasic sites in single DNA molecules. Lab Chip.2021 Apr 20;21(8):1579-1589. doi: 10.1039/d0lc01038c. PubMed PMID: 33651049; PubMed Central PMCID: PMC8293902.
42. Wijerathne H, Witek MA, Jackson JM, Brown V, Hupert ML, Herrera K, Kramer C, Davidow AE, Li Y, Baird AE, Murphy MC, Soper SA. Affinity enrichment of extracellular vesicles from plasma reveals mRNA changes associated with acute ischemic stroke. Commun Biol. 2020 Oct 26;3(1):613. PubMed PMID: 33106557; PubMed Central PMCID: PMC7589468.
43. Zhao J, Qiu J, Aryal S, Hackett JL, Wang J. The RNA Architecture of the SARS-CoV-2 3'-Untranslated Region. Viruses.2020 Dec 21;12(12). doi: 10.3390/v12121473. PubMed PMID: 33371200; PubMed Central PMCID: PMC7766253.
44. Zhu C, El Qaidi S, McDonald P, Roy A, Hardwidge PR. YM155 Inhibits NleB and SseK Arginine Glycosyltransferase Activity. Pathogens.2021 February 23;10(2). PubMed PMID: 33672424; PubMed Central PMCID: PMC7926936.

1.  Alam P, Haile B, Arif M, Pandey R, Rokvic M, Nieman M, Maliken BD, Paul A, Wang YG, Sadayappan S, Ahmed RPH, Kanisicak O. Inhibition of Senescence-Associated Genes Rb1 and Meis2 in Adult Cardiomyocytes Results in Cell Cycle Reentry and Cardiac Repair Post-Myocardial Infarction. J Am Heart Assoc. 2019 Aug 6;8(15):e012089. PubMed PMID: 31315484; PubMed Central PMCID: PMC6761626.

2.  Basu S, Alkiswani AR, Pacelli S, Paul A. Nucleic Acid-Based Dual Cross-Linked Hydrogels for in Situ Tissue Repair via Directional Stem Cell Migration. ACS Applied Materials & Interfaces. 2019 September 25;11(38):34621-34633. PubMed PMID: 31483598; PubMed Central PMCID: PMC7291362.

3.  Benomar S, Evans KC, Unckless RL, Chandler JR. Efflux Pumps in Chromobacterium Species Increase Antibiotic Resistance and Promote Survival in a Coculture Competition Model. Appl Environ Microbiol. 2019 Oct 1;85(19). PubMed PMID: 31324628; PubMed Central PMCID: PMC6752006.

4.  Benomar S, Lansdon P, Bender AM, Peterson BR, Chandler JR, Ackley BD. The C. elegans CHP1 homolog, pbo-1, functions in innate immunity by regulating the pH of the intestinal lumen. PLoS Pathog. 2020 Jan;16(1):e1008134. eCollection 2020 Jan. PubMed PMID: 31917826; PubMed Central PMCID: PMC6952083.

5.  Caruso G, Fresta CG, Fidilio A, O'Donnell F, Musso N, Lazzarino G, Grasso M, Amorini AM, Tascedda F, Bucolo C, Drago F, Tavazzi B, Lazzarino G, Lunte SM, Caraci F. Carnosine Decreases PMA-Induced Oxidative Stress and Inflammation in Murine Macrophages. Antioxidants (Basel). 2019 Aug 6;8(8). PubMed PMID: 31390749; PubMed Central PMCID: PMC6720685.

6.  Caruso G, Musso N, Grasso M, Costantino A, Lazzarino G, Tascedda F, Gulisano M, Lunte SM, Caraci, F. Microfluidics as a Novel Tool for Biological and Toxicological Assays in Drug Discovery Processes: Focus on Microchip Electrophoresis. Micromachines (Basel). 2020 Jun 15;11(6):593. PubMed PMID: 32549277; PubMed Central PMCID: PMC7344675.

7.  Chakraborty A, Hertel A, Ditmars H, Dhar P. Impact of Engineered Carbon Nanodiamonds on the Collapse Mechanism of Model Lung Surfactant Monolayers at the Air-Water Interface. Molecules. 2020 Feb 7;25(3). PubMed PMID: 32046011; PubMed Central PMCID: PMC7037128

8.  Christensen EL, Beasley A, Radchuk J, Mielko ZE, Preston E, Stuckett S, Murray JI, Hudson ML. ngn-1/neurogenin Activates Transcription of Multiple Terminal Selector Transcription Factors in the Caenorhabditis elegans Nervous System. G3 (Bethesda). 2020 Jun 1;10(6):1949-1962. PubMed PMID: 32273286; PubMed Central PMCID: PMC7263688.

9.  Greenberg EP, Chandler JR, Seyedsayamdost MR. The Chemistry and Biology of Bactobolin: A 10-Year Collaboration with Natural Product Chemist Extraordinaire Jon Clardy. J Nat Prod. 2020 Mar 27;83(3):738-743. PubMed PMID: 32105069; PubMed Central PMCID: PMC8118907.

10.  Guerra-Maupome M, McGill JL. Characterization of local and circulating bovine γδ T cell responses to respiratory BCG vaccination. Sci Rep. 2019 Nov 5;9(1):15996. PubMed PMID: 31690788; PubMed Central PMCID: PMC6831659.

11.  Gunasekara DB, Wijesinghe MB, Pichetsurnthorn P, Lunte SM. Evaluation of dual electrode configurations for microchip electrophoresis used for voltammetric characterization of electroactive species. Analyst. 2020 Feb 3;145(3):865-872. PubMed PMID: 31820743; PubMed Central PMCID: PMC7256876.

12.  Gunawardhana SM, Bulgakova GA, Barybin AM, Thomas SR, Lunte SM. Progress toward the development of a microchip electrophoresis separation-based sensor with electrochemical detection for on-line in vivo monitoring of catecholamines. Analyst.2020 Mar 2;145(5):1768-1776. PubMed PMID: 31915763; PubMed Central PMCID: PMC7127871.

13.  Hemmer LW, Dias GB, Smith B, Van Vaerenberghe K, Howard A, Bergman CM, Blumenstiel JP. Hybrid dysgenesis in Drosophila virilis results in clusters of mitotic recombination and loss-of-heterozygosity but leaves meiotic recombination unaltered. Mob DNA. 2020;11:10. eCollection 2020. PubMed PMID: 32082426; PubMed Central PMCID: PMC7023781.

14.  Hill T, Koseva BS, Unckless RL. The genome of Drosophila innubila reveals lineage-specific patterns of selection in immune genes. Mol Biol Evol. 2019 Jul 1;36(7):1405-1417. PubMed PMID: 30865231; PubMed Central PMCID: PMC6573480.

15.  Knewtson K, Gonzalez Flores JG, Pacicca D, Robinson J. Transcriptome Sequencing Reveals Sex Differences in Human Meniscal Cell Response to Estrogen Based on Dosing Kinetics. bioRxiv 2020.04.27.064451; doi: https://doi.org/10.1101/2020.04.27.064451.

16.  Knewtson KE, Perera C, Hymel D, Gao Z, Lee MM, Peterson BR. Antibody-Drug Conjugate that Exhibits Synergistic Cytotoxicity with an Endosome-Disruptive Peptide. ACS Omega.2019 Jul 31;4(7):12955-12968. eCollection 2019 Jul 31. PubMed PMID: 31460422; PubMed Central PMCID: PMC6690568.

17.  Koseva BS, Hackett JL, Zhou Y, Harris BR, Kelly JK, Greenfield MD, Gleason JM, Macdonald SJ. Quantitative Genetic Mapping and Genome Assembly in the Lesser Wax Moth Achroia grisella. G3(Bethesda).2019 Jul 9;9(7):2349-2361. PubMed PMID: 31101652; PubMed Central PMCID: PMC6643890.

18.  LaBrie SD, Dimond ZE, Harrison KS, Baid S, Wickstrum J, Suchland RJ, Hefty PS. Transposon Mutagenesis in Chlamydia trachomatis Identifies CT339 as a ComEC Homolog Important for DNA Uptake and Lateral Gene Transfer. MBio. 2019 Aug 6;10(4). PubMed PMID: 31387908; PubMed Central PMCID: PMC6686042.

19.  Lagerman CE, López Acevedo SN, Fahad AS, Hailemariam AT, Madan B, DeKosky BJ. Ultrasonically-guided flow focusing generates precise emulsion droplets for high-throughput single cell analyses. J Biosci Bioeng.2019 Aug;128(2):226-233. PubMed PMID: 30904454; PubMed Central PMCID: PMC6688500.

20.  McGill JL, Kelly SM, Guerra-Maupome M, Winkley E, Henningson J, Narasimhan B, Sacco RE. Vitamin A deficiency impairs the immune response to intranasal vaccination and RSV infection in neonatal calves. Sci Rep.2019 Oct 22;9(1):15157. PubMed PMID: 31641172; PubMed Central PMCID: PMC6805856.

21.  Pahattuge TN, Jackson JM, Rane D, Wijerathne H, Brown V, Witek MA,Perera C, Givens RS, Peterson BR, Soper SA. Visible photorelease of liquid biopsy markers following microfluidic affinity-enrichment. Chemical Communications (Cambridge, England). 2020 April 14;56(29):4098-4101. PubMed PMID: 32163053; PubMed Central PMCID: PMC7469076.

22.  Radeke, LJ and Herman, MA. Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia. BMC Microbiol. 2020 Jun 19;20(1):170. PubMed PMID: 32560629; PubMed Central PMCID: PMC7304212.

23.  Robinson JL, Johnson PM, Kister K, Yin MT, Chen J, Wadhwa S. Estrogen signaling impacts temporomandibular joint and periodontal disease pathology. Odontology. 2020 Apr;108(2):153-165. Review. PubMed PMID: 31270648; PubMed Central PMCID: PMC7192637.

24.  Slinger BL, Deay JJ, Chandler JR, Blackwell HE. Potent modulation of the CepR quorum sensing receptor and virulence in a Burkholderia cepacia complex member using non-native lactone ligands. Sci Rep.2019 Sep 17;9(1):13449. PubMed PMID: 31530834; PubMed Central PMCID: PMC6748986.

25.  Thippabhotla S, Zhong C, He M. 3D cell culture stimulates the secretion of in vivo like extracellular vesicles. Sci Rep.2019 Sep 10;9(1):13012. PubMed PMID: 31506601; PubMed Central PMCID: PMC6736862.

26.  Wang D, Stoveken HM, Zucca S, Dao M, Orlandi C, Song C, Masuho I, Johnston C, Opperman KJ, Giles AC, Gill MS, Lundquist EA, Grill B, Martemyanov KA. Genetic behavioral screen identifies an orphan anti-opioid system. Science. 2019 Sep 20;365(6459):1267-1273. PubMed PMID: 31416932; PubMed Central PMCID: PMC7074901.

27.  Waters R, Subham S, Pacelli S, Modaresi S, Chakravarti AR, Paul A. Development of MicroRNA-146a-Enriched Stem Cell Secretome for Wound-Healing Applications. Molecular Pharmaceutics. 2019 October 7;16(10):4302-4312. PubMed PMID: 31398053; PubMed Central PMCID: PMC7260687.

28.  Wessinger CA, Rausher MD, Hileman LC. Adaptation to hummingbird pollination is associated with reduced diversification in Penstemon. Evolution letters. 2019 October;3(5):521-533. PubMed PMID: 31636944; PubMed Central PMCID: PMC6791294.

29.  Wu X, Gardashova G, Lan L, Han S, Zhong C, Marquez RT, Wei L, Wood S, Roy S, Gowthaman R, Karanicolas J, Gao FP, Dixon DA, Welch DR, Li L, Ji M, Aubé J, Xu L. Targeting the interaction between RNA-binding protein HuR and FOXQ1 suppresses breast cancer invasion and metastasis. Commun Biol. 2020 April 24;3(1):193. PubMed PMID: 32332873; PubMed Central PMCID: PMC7181695.

30.  Zhang P, Wu X, Gardashova G, Yang Y, Zhang Y, Xu L, Zeng Y. Molecular and functional extracellular vesicle analysis using nanopatterned microchips monitors tumor progression and metastasis. Sci Transl Med. 2020 June 10;12(547). PubMed PMID: 32522804; PubMed Central PMCID: PMC8024111.

31.  Zhou X, Ravichandran GC, Zhang P, Yang Y, Zeng Y. A microfluidic alternating-pull-push active digitization method for sample-loss-free digital PCR. Lab Chip.2019 Dec 21;19(24):4104-4116. PubMed PMID: 31720646; PubMed Central PMCID: PMC6894176.

32.  Zhu Q, Hamilton M, Vasquez B, He M. 3D-printing enabled micro-assembly of a microfluidic electroporation system for 3D tissue engineering. Lab Chip.2019 Jul 9;19(14):2362-2372. PubMed PMID: 31214669; PubMed Central PMCID: PMC6636854.

1.  Ahmed I, Roy BC, Raach RT, Owens SM, Xia L, Anant S, Sampath V, Umar S. Enteric infection coupled with chronic Notch pathway inhibition alters colonic mucus composition leading to dysbiosis, barrier disruption and colitis.PLoS One. 2018 ;13(11):e0206701. eCollection 2018. PubMed PMID: 30383855; PubMed Central PMCID: PMC6211731. 

2.  Al-Hashimi H, Chiarelli T, Lundquist EA, Buechner M. Novel exc Genes Involved in Formation of the Tubular Excretory Canals of Caenorhabditis elegans. G3 (Bethesda).2019 May 7;9(5):1339-1353. PubMed PMID: 30885922; PubMed Central PMCID: PMC6505153.

3.  Al-Hashimi H, Hall DH, Ackley BD, Lundquist EA, Buechner M. Tubular Excretory Canal Structure Depends on Intermediate Filaments EXC-2 and IFA-4 in Caenorhabditis elegans. Genetics.2018 Oct;210(2):637-652. PubMed PMID: 29945901; PubMed Central PMCID: PMC6216577.

4.  Alrefai MT, Tarola CL, Raagas R, Ridwan K, Shalal M, Lomis N, Paul A, Alrefai MD, Prakash S, Schwertani A, Shum-Tim D. Functional Assessment of Pluripotent and Mesenchymal Stem Cell Derived Secretome in Heart Disease. Ann Stem Cell Res. 2019;2(1):29-36. PubMed PMID: 32064466; PubMed Central PMCID: PMC7020557.

5.  Bandyopadhyay A, Wang H, Ray JCJ. Lineage space and the propensity of bacterial cells to undergo growth transitions. PLoS Comput Biol. 2018 Aug;14(8):e1006380. PubMed PMID: 30133447; PubMed Central PMCID: PMC6122811.

6.  Basu S, Pacelli S, Feng Y, Lu Q, Wang J, Paul A. Harnessing the Noncovalent Interactions of DNA Backbone with 2D Silicate Nanodisks To Fabricate Injectable Therapeutic Hydrogels. ACS Nano.2018 Oct 23;12(10):9866-9880. PubMed PMID: 30189128; PubMed Central PMCID: PMC6563937.

7.  Campos CDM, Gamage SST, Jackson JM, Witek MA, Park DS, Murphy MC, Godwin AK, Soper SA. Microfluidic-based solid phase extraction of cell free DNA. Lab Chip.2018 Nov 6;18(22):3459-3470. PubMed PMID: 30339164; PubMed Central PMCID: PMC6391159.

8.  Cao H, Zhou X, Zeng Y. Microfluidic Exponential Rolling Circle Amplification for Sensitive microRNA Detection Directly from Biological Samples. Sens Actuators B Chem. 2019 Jan 15;279:447-457. PubMed PMID: 30533973; PubMed Central PMCID: PMC6284813.

9.  Caruso G, Fresta CG, Lazzarino G, Distefano DA, Parlascino P, Lunte SM, Lazzarino G, Caraci F. Sub-Toxic Human Amylin Fragment Concentrations Promote the Survival and Proliferation of SH-SY5Y Cells via the Release of VEGF and HspB5 from Endothelial RBE4 Cells. Int J Mol Sci.2018 Nov 20;19(11). PubMed PMID: 30463298; PubMed Central PMCID: PMC6274958.

10.  Caruso G, Fresta CG, Musso N, Giambirtone M, Grasso M, Spampinato SF, Merlo S, Drago F, Lazzarino G, Sortino MA, Lunte SM, Caraci F. Carnosine Prevents Aβ-Induced Oxidative Stress and Inflammation in Microglial Cells: A Key Role of TGF-β1. Cells. 2019 Jan 17;8(1). PubMed PMID: 30658430; PubMed Central PMCID: PMC6356400.

11.  Chakravarti AR, Pacelli S, Alam P, Bagchi S, Modaresi S, Czirok A, Ahmed RP,Paul A. Pre-Conditioning Stem Cells in a Biomimetic Environment for Enhanced Cardiac Tissue Repair: In Vitro and In Vivo Analysis. Cel. Mol. Bioeng.2018 October; 11(5):321-336. PubMed PMID: 31579283; PubMed Central PMCID: PMC6774647.

12.  Colicchio JM, Kelly JK, Hileman LC. Parental experience modifies the Mimulus methylome. BMC Genomics. 2018 Oct 12;19(1):746. PubMed PMID: 30314445; PubMed Central PMCID: PMC6186029.

13.  Cooley SM, Hamilton T, Deeds EJ, Ray JCJ. A novel metric reveals previously unrecognized distortion in dimensionality reduction of scRNA-Seq data. bioRxiv 689851; doi: https://doi.org/10.1101/689851.

14.  Erwin AA, Blumenstiel JP. Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements. BMC Genomics.2019 Apr 23;20(1):305. PubMed PMID: 31014230; PubMed Central PMCID: PMC6480902.

15.  Griffin JD, Christopher MA, Thati S, Salash JR, Pressnall MM, Weerasekara DB, Lunte SM, Berkland CJ. Tocopherol Emulsions as Functional Autoantigen Delivery Vehicles Evoke Therapeutic Efficacy in Experimental Autoimmune Encephalomyelitis. Mol Pharm.2019 Feb 4;16(2):607-617. PubMed PMID: 30615457; PubMed Central PMCID: PMC6557722.

16.  Guerra-Maupome M, Palmer MV, Waters WR, McGill JL. Characterization of γδ T Cell Effector/Memory Subsets Based on CD27 and CD45R Expression in Response to Mycobacterium bovis Infection. Immunohorizons. 2019 Jun 12;3(6):208-218. PubMed PMID: 31356167; PubMed Central PMCID: PMC6875775.

17.  Guerra-Maupome M, Vang DX, McGill JL. Aerosol vaccination with Bacille Calmette-Guerin induces a trained innate immune phenotype in calves. PLoS One.2019;14(2):e0212751. eCollection 2019. PubMed PMID: 30794653; PubMed Central PMCID: PMC6386280.

18.  Gujar MR, Stricker AM, Lundquist EA. RHO-1 and the Rho GEF RHGF-1 interact with UNC-6/Netrin signaling to regulate growth cone protrusion and microtubule organization in Caenorhabditis elegans. PLoS Genet. 2019 Jun;15(6):e1007960. eCollection 2019 Jun. PubMed PMID: 31233487; PubMed Central PMCID: PMC6611649.

19.  Gujar MR, Sundararajan L, Stricker A, Lundquist EA. Control of Growth Cone Polarity, Microtubule Accumulation, and Protrusion by UNC-6/Netrin and Its Receptors in Caenorhabditis elegans. Genetics.2018 Sep;210(1):235-255. PubMed PMID: 30045855; PubMed Central PMCID: PMC6116952.

20.  Gunawardhana SM, Lunte SM. Continuous Monitoring of Adenosine and its Metabolites using Microdialysis Coupled to Microchip Electrophoresis with Amperometric Detection. Anal. Methods. 2018 July; 10(30):3737. PubMed PMID: 31579297; PubMed Central PMCID: PMC6774626.

21.  Hu W, Soper SA, Jackson JM. Time-Delayed Integration-Spectral Flow Cytometer (TDI-SFC) for Low-Abundance-Cell Immunophenotyping. Anal Chem.2019 Apr 2;91(7):4656-4664. PubMed PMID: 30817129; PubMed Central PMCID: PMC6554645.

22.  Klaus JR, Deay J, Neuenswander B, Hursh W, Gao Z, Bouddhara T, Williams TD, Douglas J, Monize K, Martins P, Majerczyk C, Seyedsayamdost MR, Peterson BR, Rivera M, Chandler JR. Malleilactone Is a Burkholderia pseudomallei Virulence Factor Regulated by Antibiotics and Quorum Sensing. J Bacteriol.2018 Jul 15;200(14). PubMed PMID: 29735757; PubMed Central PMCID: PMC6018353.

23.  Knewtson KE, Rane D, Peterson BR. Targeting Fluorescent Sensors to Endoplasmic Reticulum Membranes Enables Detection of Peroxynitrite During Cellular Phagocytosis. ACS Chem Biol.2018 Sep 21;13(9):2595-2602. PubMed PMID: 30141903; PubMed Central PMCID: PMC6204062.

24.  McGill JL, Guerra-Maupome M, Schneider S. Prophylactic digoxin treatment reduces IL-17 production in vivo in the neonatal calf and moderates RSV-associated disease. PLoS One.2019;14(3):e0214407. eCollection 2019. PubMed PMID: 30908540; PubMed Central PMCID: PMC6433258.

25.  Mongue AJ, Hansen ME, Gu L, Sorenson CE, Walters JR. Nonfertilizing sperm in Lepidoptera show little evidence for recurrent positive selection. Mol Ecol.2019 May;28(10):2517-2530. PubMed PMID: 30972892; PubMed Central PMCID: PMC6584056.

26.  Pacelli S, Rampetsreiter K, Modaresi S, Subham S, Chakravarti AR, Lohfeld S, Detamore MS, Paul A. Fabrication of a Double-Cross-Linked Interpenetrating Polymeric Network (IPN) Hydrogel Surface Modified with Polydopamine to Modulate the Osteogenic Differentiation of Adipose-Derived Stem Cells. ACS Appl Mater Interfaces.2018 Aug 1;10(30):24955-24962. PubMed PMID: 29969894; PubMed Central PMCID: PMC6535093.

27.  Reiner DJ, Lundquist EA. Small GTPases. WormBook.2018 Aug 16;2018:1-65. Review. PubMed PMID: 27218782; PubMed Central PMCID: PMC6369420.

28.  Siegel JM, Schilly KM, Wijesinghe MB, Caruso G, Fresta CG, Lunte SM. Optimization of a microchip electrophoresis method with electrochemical detection for the determination of nitrite in macrophage cells as an indicator of nitric oxide production. Anal. Methods. 2019 Jan 14;11(2):148-156. PubMed PMID: 31579404; PubMed Central PMCID: PMC6774641.

29.  Wessinger CA, Kelly JK, Jiang P, Rausher MD, Hileman LC. SNP-skimming: A fast approach to map loci generating quantitative variation in natural populations. Mol Ecol Resour.2018 Nov;18(6):1402-1414. PubMed PMID: 30033616; PubMed Central PMCID: PMC6207453.

30.  Yang Y, Zeng Y. Microfluidic communicating vessel chip for expedited and automated immunomagnetic assays. Lab Chip.2018 Dec 4;18(24):3830-3839. PubMed PMID: 30394473; PubMed Central PMCID: PMC6279511.

31.  Zhang P, Crow J, Lella D, Zhou X, Samuel G, Godwin AK, Zeng Y. Ultrasensitive quantification of tumor mRNAs in extracellular vesicles with an integrated microfluidic digital analysis chip. Lab Chip.2018 Dec 4;18(24):3790-3801. PubMed PMID: 30474100; PubMed Central PMCID: PMC6310142.

32.  Zhang P, Zhou X, He M, Shang Y, Tetlow AL, Godwin AK, Zeng Y. Ultrasensitive detection of circulating exosomes with a 3D-nanopatterned microfluidic chip. Nat Biomed Eng.2019 Jun;3(6):438-451. PubMed PMID: 31123323; PubMed Central PMCID: PMC6556143.

33.  Zhang P, Zhou X, Zeng Y. Multiplexed immunophenotyping of circulating exosomes on nano-engineered ExoProfile chip towards early diagnosis of cancer. Chemical science2019 June 7;10(21):5495-5504. PubMed PMID: 31293733; PubMed Central PMCID: PMC6544119.

34.  Zhao Z, McGill J, Gamero-Kubota P, He M. Microfluidic on-demand engineering of exosomes towards cancer immunotherapy. Lab Chip.2019 May 14;19(10):1877-1886. PubMed PMID: 31044204; PubMed Central PMCID: PMC6520140.

1.  Abisado RG, Benomar S, Klaus JR, Dandekar AA, Chandler JR. Bacterial Quorum Sensing and Microbial Community Interactions. MBio.2018 May 22;9(3). pii: e02331-17. PubMed PMID: 29789364; PubMed Central PMCID: PMC5964356.

2.  Arif M, Pandey R, Alam P, Jiang S, Sadayappan S, Paul A, Ahmed RPH. MicroRNA-210-mediated proliferation, survival, and angiogenesis promote cardiac repair post myocardial infarction in rodents. J Mol Med (Berl).2017 Dec;95(12):1369-1385. PubMed PMID: 28948298; PubMed Central PMCID: PMC5941944.

3.  Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW, Blaby-Haas CE, Helliwell KE, Chan CX, Marriage TN, Bhattacharya D, Klein AS, Badis Y, Brodie J, Cao Y, Collén J, Dittami SM, Gachon CMM, Green BR, Karpowicz SJ, Kim JW, Kudahl UJ, Lin S, Michel G, Mittag M, Olson BJSC, Pangilinan JL, Peng Y, Qiu H, Shu S, Singer JT, Smith AG, Sprecher BN, Wagner V, Wang W, Wang ZY, Yan J, Yarish C, Zäuner-Riek S, Zhuang Y, Zou Y, Lindquist EA, Grimwood J, Barry KW, Rokhsar DS, Schmutz J, Stiller JW, Grossman AR, Prochnik SE. Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proc Natl Acad Sci U S A.2017 Aug 1;114(31):E6361-E6370. PubMed PMID: 28716924; PubMed Central PMCID: PMC5547612.

4.  Caruso G, Fresta CG, Martinez-Becerra F, Antonio L, Johnson RT, de Campos RPS, Siegel JM, Wijesinghe MB, Lazzarino G, Lunte SM. Carnosine modulates nitric oxide in stimulated murine RAW 264.7 macrophages. Mol Cell Biochem.2017 Jul;431(1-2):197-210. PubMed PMID: 28290048; PubMed Central PMCID: PMC5697141.

5.  Caruso G, Fresta CG, Siegel JM, Wijesinghe MB, Lunte SM. Microchip electrophoresis with laser-induced fluorescence detection for the determination of the ratio of nitric oxide to superoxide production in macrophages during inflammation. Anal Bioanal Chem. 2017 Jul;409(19):4529-4538. PubMed PMID: 28555342; PubMed Central PMCID: PMC5525329.

6.  El Qaidi S, Zhu C, McDonald P, Roy A, Maity PK, Rane D, Perera C, Hardwidge PR. High-Throughput Screening for Bacterial Glycosyltransferase Inhibitors. Front Cell Infect Microbiol.2018;8:435. doi: 10.3389/fcimb.2018.00435. eCollection 2018. PubMed PMID: 30619781; PubMed Central PMCID: PMC6305410.

7.  Evans KC, Benomar S, Camuy-Vélez LA, Nasseri EB, Wang X, Neuenswander B, Chandler JR. Quorum-sensing control of antibiotic resistance stabilizes cooperation in Chromobacterium violaceum. ISME J.2018 Jan 26. PubMed PMID: 29374267; PubMed Central PMCID: PMC5932061.

8.  Field TM, Shin M, Stucky CS, Loomis J, Johnson MA. Electrochemical Measurement of Dopamine Release and Uptake in Zebrafish Following Treatment with Carboplatin. Chemphyschem.2018 May 22;19(10):1192-1196. PubMed PMID: 29573086; PubMed Central PMCID: PMC6013284.

9.  Fowler SC, Mosher LJ, Godar SC, Bortolato M. Assessment of gait and sensorimotor deficits in the D1CT-7 mouse model of Tourette syndrome. J Neurosci Methods2017 Dec 1;292:37-44. PubMed PMID: 28099872; PubMed Central PMCID: PMC5511586.

10.  Fresta CG, Chakraborty A, Wijesinghe MB, Amorini AM, Lazzarino G, Lazzarino G, Tavazzi B, Lunte SM, Caraci F, Dhar P, Caruso G. Non-toxic engineered carbon nanodiamond concentrations induce oxidative/nitrosative stress, imbalance of energy metabolism, and mitochondrial dysfunction in microglial and alveolar basal epithelial cells. Cell Death Dis. 2018 Feb 14;9(2):245. PubMed PMID: 29445138; PubMed Central PMCID: PMC5833425.

11.  Highfill CA, Tran JH, Nguyen SKT, Moldenhauer TR, Wang X, Macdonald SJ. Naturally Segregating Variation at Ugt86Dd Contributes to Nicotine Resistance in Drosophila melanogaster. Genetics.2017 Sep;207(1):311-325. PubMed PMID: 28743761; PubMed Central PMCID: PMC5586381.

12.  Hill T, Unckless RL. Baculovirus Molecular Evolution via Gene Turnover and Recurrent Positive Selection of Key Genes. J Virol.2017 Oct 27;91(22). pii: e01319-17. doi: 10.1128/JVI.01319-17. Print 2017 Nov 15. PubMed PMID: 28814516; PubMed Central PMCID: PMC5660496.

13.  Hill T, Unckless RL. The dynamic evolution of Drosophila innubila Nudivirus. Infect Genet Evol.2018 Jan;57:151-157. PubMed PMID: 29155284; PubMed Central PMCID: PMC5725240.

14.  Kaplan SV, Limbocker RA, Levant B, Johnson MA. Regional differences in dopamine release in the R6/2 mouse caudate putamen. Electroanalysis.2018 Jun;30(6):1066-1072.827. PubMed PMID: 29955208; PubMed Central PMCID: PMC6016844.

15.  McGill JL, Kelly SM, Kumar P, Speckhart S, Haughney SL, Henningson J, Narasimhan B, Sacco RE. Efficacy of mucosal polyanhydride nanovaccine against respiratory syncytial virus infection in the neonatal calf. Sci Rep.2018 Feb 14;8(1):3021. PubMed PMID: 29445124; PubMed Central PMCID: PMC5813012.

16.  Modaresi S, Pacelli S, Whitlow J, Paul A. Deciphering the role of substrate stiffness in enhancing the internalization efficiency of plasmid DNA in stem cells using lipid-based nanocarriers. Nanoscale. 2018 May 17;10(19):8947-8952. PubMed PMID: 29693099; PubMed Central PMCID: PMC5957767.

17.  Pacelli S, Acosta F, Chakravarti AR, Samanta SG, Whitlow J, Modaresi S, Ahmed RPH, Rajasingh J, Paul A. Nanodiamond-based injectable hydrogel for sustained growth factor release: Preparation, characterization and in vitro analysis. Acta Biomater.2017 Aug;58:479-491. PubMed PMID: 28532899; PubMed Central PMCID: PMC5560430.

18.  Pacelli S, Basu S, Berkland C, Wang J, Paul A. Design of a cytocompatible hydrogel coating to modulate properties of ceramic-based scaffolds for bone repair. Cell Mol Bioeng. 2018 Jun;11(3):211-217. Epub 2018 Apr 6. PubMed PMID: 30338007; PubMed Central PMCID: PMC6188648.

19.  Pacelli S, Basu S, Whitlow J, Chakravarti A, Acosta F, Varshney A, Modaresi S, Berkland C, Paul A. Strategies to develop endogenous stem cell-recruiting bioactive materials for tissue repair and regeneration. Adv Drug Deliv Rev.2017 Oct 1;120:50-70. Review. PubMed PMID: 28734899; PubMed Central PMCID: PMC5705585.

20.  Pacelli S, Maloney R, Chakravarti AR, Whitlow J, Basu S, Modaresi S, Gehrke S, Paul A. Controlling Adult Stem Cell Behavior Using Nanodiamond-Reinforce Hydrogel: Implication in Bone Regeneration Therapy. Sci Rep.2017 Jul 26;7(1):6577. PubMed PMID: 28747768; PubMed Central PMCID: PMC5529511.

21.  Reeves WM, Wu Y, Harder MJ, Veeman MT. Functional and evolutionary insights from the Ciona notochord transcriptome. Development. 2017 Sep 15;144(18):3375-3387. PubMed PMID: 28928284; PubMed Central PMCID: PMC5612257.

22.  Rusk RA, Palmer MV, Waters WR, McGill JL. Measuring bovine γδ T cell function at the site of Mycobacterium bovis infection. Vet Immunol Immunopathol.2017 Dec;193-194:38-49. PubMed PMID: 29129226; PubMed Central PMCID: PMC5703227.

23.  Saylor RA, Lunte SM. PDMS/glass hybrid device with a reusable carbon electrode for on-line monitoring of catecholamines using microdialysis sampling coupled to microchip electrophoresis with electrochemical detection. Electrophoresis. 2018 Feb;39(3):462-469. PubMed PMID: 28737835; PubMed Central PMCID: PMC5783789.

24.  Shin M, Field TM, Stucky CS, Furgurson MN, Johnson MA. Ex Vivo Measurement of Electrically Evoked Dopamine Release in Zebrafish Whole Brain. ACS Chem Neurosci.2017 Sep 20;8(9):1880-1888. PubMed PMID: 28617576; PubMed Central PMCID: PMC5846466.

25.  Smith BR, Unckless RL. Draft Genome Sequence of Lysinibacillus fusiformis Strain Juneja, a Laboratory-Derived Pathogen of Drosophila melanogaster. Genome Announc. 2018 Feb 1;6(5). pii: e01571-17. doi: 10.1128/genomeA.01571-17. PubMed PMID: 29437109; PubMed Central PMCID: PMC5794956.

26.  Waters R, Alam P, Pacelli S, Chakravarti AR, Ahmed RPH, Paul A. Stem cell-inspired secretome-rich injectable hydrogel to repair injured cardiac tissue. Acta Biomater. 2018 Mar 15;69:95-106. PubMed PMID: 29281806; PubMed Central PMCID: PMC5831493.

27.  Whitlow J, Pacelli S, Paul A. Multifunctional nanodiamonds in regenerative medicine: Recent advances and future directions. J Control Release. 2017 Sep 10;261:62-86. PubMed PMID: 28596105; PubMed Central PMCID: PMC5560434.

28.  Zhu Q, Heon M, Zhao Z, He M. Microfluidic engineering of exosomes: editing cellular messages for precision therapeutics. Lab Chip. 2018 Jun 12;18(12):1690-1703. PubMed PMID: 29780982; PubMed Central PMCID: PMC5997967.

1.  Eshelman K, Yao H, Punchi Hewage AN, Deay JJ, Chandler JR, Rivera M. Inhibiting the BfrB:Bfd interaction in Pseudomonas aeruginosa causes irreversible iron accumulation in bacterioferritin and iron deficiency in the bacterial cytosol. Metallomics2017 Jun 21;9(6):646-659. PubMed PMID: 28318006; PubMed Central PMCID: PMC5494978.

2.  Fischer A, Harrison KS, Ramirez Y, Auer D, Chowdhury SR, Prusty BK, Sauer F, Dimond Z, Kisker C, Hefty PS, Rudel T. Chlamydia trachomatis-containing vacuole serves as deubiquitination platform to stabilize Mcl-1 and to interfere with host defense. Elife.2017 Mar 28;6. pii: e21465. PubMed PMID: 28347402; PubMed Central PMCID: PMC5370187.

3.  Fresta CG, Hogard ML, Caruso G, Melo Costa EE, Lazzarino G, Lunte SM. Monitoring carnosine uptake by RAW 264.7 macrophage cells using microchip electrophoresis with fluorescence detection. Anal. Methods2017Jan 21;9(3):402-408. PubMed PMID: 29104617; PubMed Central PMCID: PMC5663230.

4.  Godar SC, Bortolato M. What makes you tic? Translational approaches to study the role of stress and contextual triggers in Tourette syndrome. Neurosci Biobehav Rev.2017 May;76(Pt A):123-133. PubMed PMID: 27939782; PubMed Central PMCID: PMC5403589.

5.  Godar SC, Mosher LJ, Strathman HJ, Gochi AM, Jones CM, Fowler SC, Bortolato M. The D1CT-7 mouse model of Tourette syndrome displays sensorimotor gating deficits in response to spatial confinement. Br J Pharmacol. 2016 Jul;173(13):2111-21. PubMed PMID: 26171666. PubMed Central PMCID: PMC4908200.

6.  Hackett JL, Wang X, Smith BR, Macdonald SJ. Mapping QTL Contributing to Variation in Posterior Lobe Morphology between Strains of Drosophila melanogaster. PLoS One.2016 Sep 8;11(9):e0162573. PubMed PMID: 27606594; PubMed Central PMCID: PMC5015897.

7.  Hasan A, Waters R, Roula B, Dana R, Yara S, Alexandre T, Paul A. Engineered Biomaterials to Enhance Stem Cell-Based Cardiac Tissue Engineering and Therapy. Macromol Biosci.2016 Jul;16(7):958-77. PubMed PMID: 26953627; PubMed Central PMCID: PMC4931991.

8.  He M, Zeng Y. Microfluidic Exosome Analysis toward Liquid Biopsy for Cancer. J. Lab Autom. 2016 Aug;21(4):599-608. PubMed PMID: 27215792; PubMed Central PMCID: PMC5556932.

9.  Highfill CA, Reeves GA, Macdonald SJ. Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population. BMC Genet. 2016 Aug 2;17:113. PubMed PMID: 27485207; PubMed Central PMCID: PMC4970266.

10.  Huang W, Beer RL, Delaspre F, Wang G, Edelman HE, Park H, Azuma M, Parsons MJ. Sox9b is a mediator of retinoic acid signaling restricting endocrine progenitor differentiation. Dev Biol. 2016 Oct 1;418(1):28-39. PubMed PMID: 27565026; PubMed Central PMCID: PMC5031550.

11.  Josephson MP, Aliani R, Norris ML, Ochs ME, Gujar M, Lundquist EA. The Caenorhabditis elegans NF2/Merlin Molecule NFM-1 Nonautonomously Regulates Neuroblast Migration and Interacts Genetically with the Guidance Cue SLT-1/Slit. Genetics2017 Feb;205(2):737-748. PubMed PMID: 27913619; PubMed Central PMCID: PMC5289848.

12.  Lee MM, Gao Z, Peterson BR. Synthesis of a Fluorescent Analogue of Paclitaxel That Selectively Binds Microtubules and Sensitively Detects Efflux by P-Glycoprotein. Angew Chem Int Ed Engl. 2017 Jun 6;56(24):6927-6931.PubMed PMID: 28485901; PubMed Central PMCID: PMC5679005.

13.  Lee MM, Peterson BR. Quantification of Small Molecule-Protein Interactions using FRET between Tryptophan and the Pacific Blue Fluorophore. ACS Omega.2016 Dec 31;1(6):1266-1276. PubMed ID: 28058293; PubMed Central PMCID: PMC5204206.

14.  Manthey JD, Campillo LC, Burns KJ, Moyle RG. Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga). Syst Biol. 2016 Jul;65(4):640-50. Epub 2016 Jan 28. PubMed PMID: 26821912; PubMed Central PMCID: PMC5841389.

15.  Mosher LJ, Frau R, Pardu A, Pes R, Devoto P, Bortolato M. Selective activation of D1 dopamine receptors impairs sensorimotor gating in Long-Evans rats. Br J Pharmacol.2016 Jul;173(13):2122-34; PubMed PMID: 26101934; PubMed Central PMCID: PMC4908197.

16.  Moyle RG, Oliveros CH, Andersen MJ, Hosner PA, Benz BW, Manthey JD, Travers SL, Brown RM, Faircloth BC. Tectonic collision and uplift of Wallacea triggered the global songbird radiation. Nat Commun.2016 Aug 30;7:12709. PubMed PMID: 27575437; PubMed Central PMCID: PMC5013600.

17.  Oakley CE, Ahuja M, Sun WW, Entwistle R, Akashi T, Yaegashi J, Guo CJ, Cerqueira GC, Russo Wortman J, Wang CC, Chiang YM, Oakley BR. Discovery of McrA, a master regulator of Aspergillus secondary metabolism. Mol Microbiol.2017 Jan;103(2):347-365. PubMed PMID: 27775185; PubMed Central PMCID: PMC5218965.

18.  Pacelli S, Manoharan V, Desalvo A, Lomis N, Jodha KS, Prakash S, Paul A. Tailoring biomaterial surface properties to modulate host-implant interactions: implication in cardiovascular and bone therapy. J. Mater. Chem. B. 2016; 4(9):1586-1599. PubMed Central PMCID: PMC5019489.

19.  Park H, Galbraith R, Turner T, Mehojah J, Azuma M. Loss of Ewing sarcoma EWS allele promotes tumorigenesis by inducing chromosomal instability in zebrafish. Sci Rep. 2016 Aug 25;(6):32297. PubMed PMID: 27557633; PubMedCentral PMCID: PMC4997631.

20.  Pes R, Godar SC, Fox AT, Burgeno LM, Strathman HJ, Jarmolowicz DP, Devoto P, Levant B, Phillips PE, Fowler SC, Bortolato M. Pramipexole enhances disadvantageous decision-making: Lack of relation to changes in phasic dopamine release. Neuropharmacology 2017 Mar 1;114:77-87. PubMed ID: 27889491; PubMed Central PMCID: PMC5241163.

21.  Phaniraj S, Gao Z, Rane D, Peterson BR. Hydrophobic resorufamine derivatives: potent and selective red fluorescent probes of the endoplasmic reticulum of mammalian cells. Dyes Pigm. 2016 Dec;135:127-133. PubMed ID: 27765999; PubMed Central PMCID: PMC5066811.

22.  Plevniak K, Campbell M, Myers T, Hodges A, He, M. 3D Printed Auto-mixing Chip Enables Rapid Smartphone Diagnosis of Anemia. Biomicrofluidics2016 Oct 5;10(5):054113. eCollection 2016. PubMed ID: 27733894; PubMed Central PMCID: PMC5055529.

23.  Shankar M, Hossain MS, Biswas I. Pleiotropic Regulation of Virulence Genes in Streptococcus mutans by the Conserved Small Protein SprV. J Bacteriol. 2017 Mar 28;199(8). pii: e00847-16. PubMed ID: 28167518; PubMed Central PMCID: PMC5370425.

24.  Sofis MJ, Jarmolowicz DP, Kaplan SV, Gehringer RC, Lemley SM, Garg G, Blagg BS, Johnson MA. KU32 prevents 5-fluorouracil induced cognitive impairment. Behav Brain Res.2017 Jun 30;329:186-190. PubMed PMID: 28359881; PubMed Central PMCID: PMC5846472.

25.  Tseng BS, Majerczyk CD, Passos da Silva D, Chandler JR, Greenberg EP, Parsek MR. Quorum Sensing Influences Burkholderia thailandensis Biofilm Development and Matrix Production. J Bacteriol. 2016 Sep 9;198(19):2643-50. PubMed PMID: 27068594; PubMed Central PMCID: PMC5019063.

26.  Zhang P,He M, Zeng Y. Ultrasensitive microfluidic analysis of circulating exosomes using a nanostructured graphene oxide/polydopamine coating. Lab Chip. 2016 Aug 2;16(16):3033-42. PubMed PMID: 27045543; PubMed Central PMCID: PMC4970962.

1.  Chakraborty A, Hui E, Waring AJ, Dhar P. Combined effect of synthetic protein, Mini-B, and cholesterol on a model lung surfactant mixture at the air-water interface. Biochim Biophys Acta.2016 Apr;1858(4):904-12. PubMed PMID: 26775740; PubMed Central PMCID: PMC5705005.

2.  Colicchio JM, Miura F, Kelly JK, Ito T, Hileman LC. DNA methylation and gene expression in Mimulus guttatus. BMC Genomics. 2015 Jul 7;16:507. PubMed PMID: 26148779; PubMed Central PMCID: PMC4492170.

3.  de Campos RP, Siegel JM, Fresta CG, Caruso G, da Silva JA, Lunte SM. Indirect detection of superoxide in RAW 264.7 macrophage cells using microchip electrophoresis coupled to laser-induced fluorescence. Anal Bioanal Chem.2015 Sep;407(23):7003-12. PubMed PMID: 26159570; PubMed Central PMCID: PMC4898195.

4.  Erwin AA, Galdos MA, Wickersheim ML, Harrison CC, Marr KD, Colicchio JM, Blumenstiel JP. piRNAs Are Associated with Diverse Transgenerational Effects on Gene and Transposon Expression in a Hybrid Dysgenic Syndrome of D virilis. PLoS Genet. 2015 Aug;11(8):e1005332. PubMed PMID: 26241928; PubMed Central PMCID: PMC4524669.

5.  Frau R, Abbiati F, Bini V, Casti A, Caruso D, Devoto P, Bortolato M. Targeting neurosteroid synthesis as a therapy for schizophrenia-related alterations induced by early psychosocial stress. Schizophr Res.2015 Nov;168(3):640-8. PubMed PMID: 25999042; PubMed Central PMCID: PMC4628592.

6.  Frau R, Mosher LJ, Bini V, Pillolla G, Pes R, Saba P, Fanni S, Devoto P, Bortolato M. The neurosteroidogenic enzyme 5α-reductase modulates the role of D1 dopamine receptors in rat sensorimotor gating. Psychoneuroendocrinology.2016 Jan;63:59-67. PubMed PMID: 26415119; PubMed Central PMCID: PMC4695380.

7.  Grismer JL, Schulte JA 2nd, Alexander A, Wagner P, Travers SL, Buehler MD, Welton LJ, Brown RM. The Eurasian invasion: phylogenomic data reveal multiple Southeast Asian origins for Indian Dragon Lizards. BMC Evol Biol.2016 Feb 19;16:43. PubMed PMID: 26896057; PubMed Central PMCID: PMC4759850.

8.  Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ. The Gonium pectorale genome demonstrates co-option of cell cycle regulation during the evolution of multicellularity. Nat Commun.2016 Apr 22;7:11370. PubMed PMID: 27102219; PubMed Central PMCID: PMC4844696.

9.  Hasan A, Khattab A, Islam MA, Hweij KA, Zeitouny J, Waters R, Sayegh M, Hossain M, Paul A. Injectable Hydrogels for Cardiac Tissue Repair after Myocardial Infarction. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2015 November;2(11):1500122. PubMed PMID: 27668147; PubMed Central PMCID: PMC5033116.

10.  Hasan A, Paul A, Memic A, Khademhosseini A. A multilayered microfluidic blood vessellike structure. Biomed Microdevices. 2015 Oct;17(5):88. PubMed PMID: 26256481; PubMed Central PMCID: PMC4890640.

11.  Hymel D, Cai S, Sun Q, Henkhaus RS, Perera C, Peterson BR. Fluorescent mimics of cholesterol that rapidly bind surfaces of living mammalian cells. Chem Commun (Camb). 2015 Oct 7;51(78):14624-7. PubMed PMID: 26287483; PubMed Central PMCID: PMC4620717.

12.  Josephson MP, Chai Y, Ou G, Lundquist EA. EGL-20/Wnt and MAB-5/Hox Act Sequentially to Inhibit Anterior Migration of Neuroblasts in C elegans. PLoS One.2016;11(2):e0148658. PubMed PMID: 26863303; PubMed Central PMCID: PMC4749177.

13.  Kaplan SV, Limbocker RA, Divis JL, Osterhaus GL, Newby MD, Newman BD, Mathews TA, Johnson MA. Impaired Brain Dopamine and Serotonin Release and Uptake in Wistar Rats Following Treatment with Carboplatin. ACS Chem. Neurosci.2016, 7(6):689-699. PubMed PMID: 27145395; PubMed Central PMCID: PMC4911621.

14.  Ma J, Pan P, Anyika M, Blagg BS, Dobrowsky RT. Modulating Molecular Chaperones Improves Mitochondrial Bioenergetics and Decreases the Inflammatory Transcriptome in Diabetic Sensory Neurons. ACS Chem Neurosci.2015 Sep 16;6(9):1637-48. PubMed PMID: 26161583; PubMed Central PMCID: PMC4573952.

15.  McGill JL, Nair AD, Cheng C, Rusk RA, Jaworski DC, Ganta RR. Vaccination with an Attenuated Mutant of Ehrlichia chaffeensis Induces Pathogen-Specific CD4+ T Cell Immunity and Protection from Tick-Transmitted Wild-Type Challenge in the Canine Host. PLoS One. 2016;11(2):e0148229. PubMed PMID: 26841025; PubMed Central PMCID: PMC4739596.

16.  McGill JL, Rusk RA, Guerra-Maupome M, Briggs RE, Sacco RE. Bovine Gamma Delta T Cells Contribute to Exacerbated IL-17 Production in Response to Co-Infection with Bovine RSV and Mannheimia haemolytica. PLoS One. 2016;11(3):e0151083. PubMed PMID: 26942409; PubMed Central PMCID: PMC4778910.

17.  Meinig JM, Fu L, Peterson BR. Synthesis of Fluorophores that Target Small Molecules to the Endoplasmic Reticulum of Living Mammalian Cells. Angew Chem Int Ed Engl.2015 Aug 10;54(33):9696-9. PubMed PMID: 26118368; PubMed Central PMCID: PMC4539238.

18.  Miller DE, Smith CB, Yeganeh Kazemi N, Cockrell AJ, Arvanitakis AV, Blumenstiel JP, Jaspersen SL, Hawley RS. Whole-Genome Analysis of Individual Meiotic Events in Drosophila melanogaster Reveals that Noncrossover Gene Conversions are Insensitive to Interference and the Centromere Effect. Genetics. 2016 May;203(1):159-71. PubMed PMID: 26944917; PubMed Central PMCID: PMC4858771.

19.  Oborny NJ, Costa EE, Suntornsuk L, Abreu FC, Lunte SM. Evaluation of a Portable Microchip Electrophoresis Fluorescence Detection System for the Analysis of Amino Acid Neurotransmitters in Brain Dialysis Samples. Anal Sci.2016;32(1):35-40. PubMed PMID: 26753703; PubMed Central PMCID: PMC4875779.

20.  Paul A, Manoharan V, Krafft D, Assmann A, Uquillas JA, Shin SR, Hasan A, Hussain MA, Memic A, Gaharwar AK, Khademhosseini A. Nanoengineered biomimetic hydrogels for guiding human stem cell osteogenesis in three dimensional microenvironments. J. Mater. Chem. B. 2016; 4(20):3544-3554. PubMed PMID: 27525102; PubMed Central PMCID: PMC4980085.

21.  Saylor RA, Reid EA,Lunte SM. Microchip electrophoresis with electrochemical detection for the determination of analytes in the dopamine metabolic pathway. Electrophoresis. 2015 Aug;36(16):1912-9. PubMed PMID: 25958983; PubMed Central PMCID: PMC4875780.

22.  Schwieterman AA, Steves AN, Yee V, Donelson CJ, Bentley MR, Santorella EM, Mehlenbacher TV, Pital A, Howard AM, Wilson MR, Ereddia DE, Effrein KS, McMurry JL, Ackley BD, Chisholm AD, Hudson ML. The Caenorhabditis elegans Ephrin EFN-4 Functions Non-cell Autonomously with Heparan Sulfate Proteoglycans to Promote Axon Outgrowth and Branching. Genetics. 2016 Feb;202(2):639-60. PubMed PMID: 26645816; PubMed Central PMCID: PMC4788240.

23.  Shang Y, Zeng Y, Zeng Y. Integrated Microfluidic Lectin Barcode Platform for High-Performance Focused Glycomic Profiling. Sci Rep. 2016 Feb 2;6:20297. PubMed PMID: 26831207; PubMed Central PMCID: PMC4735825.

24.  Smalley NE, An D, Parsek MR, Chandler JR, Dandekar AA. Quorum Sensing Protects Pseudomonas aeruginosa against Cheating by Other Species in a Laboratory Coculture Model. J. Bacteriol.2015 Oct;197(19):3154-9. PubMed PMID: 26195596; PubMed Central PMCID: PMC4560282.

25.  Truong TT, Seyedsayamdost M, Greenberg EP, Chandler JR. A Burkholderia thailandensis Acyl-Homoserine Lactone-Independent Orphan LuxR Homolog That Activates Production of the Cytotoxin Malleilactone. J. Bacteriol.2015 Nov;197(21):3456-62. PubMed PMID: 26283771; PubMed Central PMCID: PMC4621068.

26.  Wang X, Hinshaw KC, Macdonald SJ, Chandler JR. Draft Genome Sequence of Chromobacterium violaceum Strain CV017. Genome Announc.2016 Mar 3;4(2) PubMed PMID: 26941151; PubMed Central PMCID: PMC4777762.

27.  Wang Y, Southard KM, Zeng Y. Digital PCR using micropatterned superporous absorbent array chips. Analyst.2016 Mar 24; PubMed PMID: 27010726; PubMed Central PMCID: PMC4899130.

28.  Waters WR, Maggioli MF, Palmer MV, Thacker TC, McGill JL, Vordermeier HM, Berney-Meyer L, Jacobs WR Jr, Larsen MH. Interleukin-17A as a Biomarker for Bovine Tuberculosis. Clin Vaccine Immunol.2015 Dec 16;23(2):168-80. PubMed PMID: 26677202; PubMed Central PMCID: PMC4744917.

29.  Waters R, Pacelli S, Maloney R, Medhi I, Ahmed RP,Paul A. Stem cell secretome-rich nanoclay hydrogel: a dual action therapy for cardiovascular regeneration. Nanoscale. 2016 Mar 31;8(14):7371-6. PubMed PMID: 26876936; PubMed Central PMCID: PMC4863075.

30.  Whitlow J, Pacelli S, Paul A. Polymeric nanohybrids as a new class of therapeutic biotransporters. Macromol. Chem. Phys. 2016 Jun; 217(11): 1245-1259. Epub 2016 Apr 26. PubMed PMID: 29151704; PubMed Central PMCID: PMC5693378.

31.  Wiley EO, Fuiten AM, Doosey, MH, Lohman BK, Merkes, C, Azuma, M. The Caudal Skeleton of the Zebrafish, Danio rerio, from a Phylogenetic Perspective: A Polyural Interpretation of Homologous Structures. Copeia2015 103(4): 740-50. PubMed PMID: 28250540; PubMed Central PMCID: PMC5328193.

32.  Zhao Z, Yang Y, Zeng Y, He M. A microfluidic ExoSearch chip for multiplexed exosome detection towards blood-based ovarian cancer diagnosis. Lab Chip.2016 Jan 26;16(3):489-96. PubMed PMID: 26645590; PubMed Central PMCID: PMC4729647.

1.  Ackley BD. Wnt-signaling and planar cell polarity genes regulate axon guidance along the anteroposterior axis in C elegans. Dev Neurobiol. 2014 Aug;74(8):781-96. PubMed PMID: 24214205; PubMed Central PMCID: PMC4167394.

2.  Alhakamy NA, Elandaloussi I, Ghazvini S, Berkland CJ, Dhar P. Effect of lipid headgroup charge and pH on the stability and membrane insertion potential of calcium condensed gene complexes. Langmuir.2015 Apr 14;31(14):4232-45. doi: 10.1021/la504970n. Epub 2015 Mar 30. PubMed PMID: 25768428. PubMed Central PMCID: PMC5704962.

3.  Chakraborty A, Mucci NJ, Tan ML, Steckley A, Zhang T, Forrest ML, Dhar P. Phospholipid composition modulates carbon nanodiamond-induced alterations in phospholipid domain formation. Langmuir. 2015 May 12;31(18):5093-104. PubMed PMID: 25876023; PubMed Central PMCID: PMC4702515.

4.  Frau R, Bini V, Pillolla G, Malherbe P, Pardu A, Thomas AW, Devoto P, Bortolato M. Positive allosteric modulation of GABAB receptors ameliorates sensorimotor gating in rodent models. CNS Neurosci Ther.2014 Jul;20(7):679-84. PubMed PMID: 24703381; PubMed Central PMCID: PMC4062587.

5.  Ghazvini S, Ricke B, Zasadzinski JA, Dhar P. Monitoring phases and phase transitions in phosphatidylethanolamine monolayers using active interfacial microrheology. Soft Matter.2015 Apr 22;11(17):3313-21. PubMed PMID: 25782993; PubMed Central PMCID: PMC4408260.

6.  Godar SC, Mosher LJ, Di Giovanni G,Bortolato M. Animal models of tic disorders: a translational perspective. J Neurosci Methods. 2014 Dec 30;238:54-69. PubMed PMID: 25244952; PubMed Central PMCID: PMC4345166.

7.  Gunasekara DB, Siegel JM, Caruso G, Hulvey MK, Lunte SM. Microchip electrophoresis with amperometric detection method for profiling cellular nitrosative stress markers. Analyst. 2014 Jul 7;139(13):3265-73. PubMed PMID: 24728039; PubMed Central PMCID: PMC4084785.

8.  Hartin SN, Hudson ML, Yingling C, Ackley BD. A Synthetic Lethal Screen Identifies a Role for Lin-44/Wnt in C. elegans Embryogenesis. PLoS One. 2015 May 4; 10(5):e0121397. PubMed PMID: 25938228; PubMed Central PMCID: PMC4418752.

9.  He M, Crow J, Roth M,Zeng Y, Godwin AK. Integrated immunoisolation and protein analysis of circulating exosomes using microfluidic technology. Lab Chip.2014 Oct 7;14(19):3773-80. PubMed PMID: 25099143; PubMed Central PMCID: PMC4161194.

10.  Meinig JM, Peterson BR. Anticancer/antiviral agent Akt inhibitor-IV massively accumulates in mitochondria and potently disrupts cellular bioenergetics. ACS Chem Biol.2015 Feb 20;10(2):570-6. PubMed PMID: 25415586; PubMed Central PMCID: PMC4340353.

11.  Meneses D, Gunasekara DB, Pichetsurnthorn P, da Silva JA, de Abreu FC, Lunte SM. Evaluation of in-channel amperometric detection using a dual-channel microchip electrophoresis device and a two-electrode potentiostat for reverse polarity separations. Electrophoresis. 2015 Feb;36(3):441-8. PubMed PMID: 25256669; PubMed Central PMCID: PMC4433753.

12.  Merkes C, Turkalo TK, Wilder N, Park H, Wenger LW, Lewin SJ, Azuma M. Ewing sarcoma ewsa protein regulates chondrogenesis of Meckel's cartilage through modulation of Sox9 in zebrafish. PLoS One.2015;10(1):e0116627. PubMed PMID: 25617839; PubMed Central PMCID: PMC4305327.

13.  Paul A. Nanocomposite hydrogels: an emerging biomimetic platform for myocardial therapy and tissue engineering. Nanomedicine (Lond). 2015 May;10(9):1371-4. PubMed PMID: 25996115; PubMed Central PMCID: PMC4854277.

14.  Scott DE, Willis SD, Gabbert S, Johnson D, Naylor E, Janle EM, Krichevsky JE, Lunte CE, Lunte SM. Development of an on-animal separation-based sensor for monitoring drug metabolism in freely roaming sheep. Analyst. 2015 Feb 20;PubMed PMID: 25697221; PubMed Central PMCID: PMC4437826.

15.  Shin M, Kaplan SV, Raider KD, Johnson MA. Simultaneous measurement and quantitation of 4-hydroxyphenylacetic acid and dopamine with fast-scan cyclic voltammetry. Analyst.2015 May 7;140(9):3039-47. PubMed PMID: 25785694; PubMed Central PMCID: PMC4507372.

16.  Sun M, Johnson MA. Measurement of total antioxidant capacity in sub-μL blood samples using craft paper-based analytical devices. RSC Advances.2015, 5(69):55633-55639. PubMed Central PMCID: PMC5026239.

17.  Sundarajan L, Norris ML, Lundquist EA. SDN-1/Syndecan Acts in Parallel to the Transmembrane Molecule MIG-13 to Promote Anterior Neuroblast Migration. G3 (Bethesda). 2015 May 28;5(8):1567-74. PubMed PMID: 26022293; PubMed Central PMCID: PMC4528313.

18.  Sundararajan L, Norris ML, Schöneich S, Ackley BD, Lundquist EA. The fat-like cadherin CDH-4 acts cell-non-autonomously in anterior-posterior neuroblast migration. Dev Biol.2014 Aug 15;392(2):141-52. PubMed PMID: 24954154; PubMed Central PMCID: PMC4136450.

1.  Alhakhamy N, Kaviratna A, Berkland CJ, Dhar P. Dynamic measurements of membrane insertion potential of synthetic cell penetrating peptides. Langmuir.2013 Dec 10;29(49):15336-49. PubMed PMID: 24294979; PubMed Central PMCID: PMC3918496.

2.  Blumenstiel JP. Whole genome sequencing in Drosophila virilis identifies Polyphemus, a recently activated Tc-1 like transposon with a possible role in hybrid dysgenesis. Mobile DNA. 2014, Feb 20;5(1):6. PubMed PMID: 24555450; PubMed PMCID: PMC3941972.

3.  Blumenstiel JP, Chen X, He M, Bergman CM. An Age-of-Allele test for neutrality of transposable element insertions. Genetics. 2014 Feb;196(2):523-38. PubMed PMID: 24336751; PubMed Central PMCID: PMC3914624.

4.  Bortolato M, Frau R, Godar SC, Mosher LJ, Paba S, Marrosu F, Devoto P. The Implication of Neuroactive Steroids in Tourette's Syndrome Pathogenesis: A Role for 5α-Reductase? J Neuroendocrinol. 2013 Nov;25(11):1196-208. PubMed PMID: 23795653; PubMed Central PMCID: PMC3849218.

5.  Bortolato M, Godar SC, Tambaro S, Li FG, Devoto P, Coba MP, Chen K, Shih JC. Early postnatal inhibition of serotonin synthesis results in long-term reductions of perseverative behaviors, but not aggression, in MAO A-deficient mice. Neuropharmacology. 2013, Dec;75:223-32. PubMed PMID: 23871843; PubMed Central PMCID: PMC3849223.

6.  Cui H, Hong C, Ying A, Yang X, Ren SQ. Ultrathin gold nanowire-functionalized carbon nanotubes for hybrid molecular sensing. ACS Nano.2013 Sep 24;7(9):7805-11. PubMed PMID: 23987824; PubMed Central PMCID: PMC3946550.

7.  El-Gendy NA, Kaviratna A, Berkland CJ, Dhar P. Delivery and performance of surfactant replacement therapies to treat pulmonary disorders. Therapeutic Delivery. 2013 Aug;4(8):951-80. PubMed PMID:23919474; PubMed Central PMCID: PMC3840129.

8.  Frau R, Bini V, Pes R, Pillolla G, Saba P, Devoto P, Bortolato M. Inhibition of 17α-hydroxylase/C17,20 lyase reduces gating deficits consequent to dopaminergic activation. Psychoneuroendocrinology. 2014 Jan;39:204-13. PubMed PMID: 24140269; PubMed Central PMCID: PMC3940882.

9.  Godar SC, Bortolato M. Gene-sex interactions in schizophrenia: focus on dopamine neurotransmission. Front Behav Neurosci. 2014;8:71. PubMed PMID: 24639636; PubMed Central PMCID: PMC3944784.

10.  Hymel D, Woydziak ZR, Peterson BR. Detection of protein-protein interactions by proximity-driven S(N)Ar reactions of lysine-linked fluorophores. J Am Chem Soc. 2014 Apr 9;136(14):5241-4. PubMed PMID: 24660775; PubMed Central PMCID: PMC4004224.

11.  Park H, Turkalo TK, Nelson K, Folmsbee SS, Robb C, Roper B, Azuma M. Ewing sarcoma EWS protein regulates midzone formation by recruiting Aurora B kinase to the midzone. Cell Cycle. 2014;13(15):2391-9. PubMed PMID: 25483190; PubMed Central PMCID: PMC4128884.

12.  Sun M,Kaplan SV, Gehringer RC, Limbocker RA, Johnson MA. Localized Drug Application and Sub-Second Voltammetric Dopamine Release Measurements in a Brain Slice Perfusion Device. Anal. Chem., 2014 May 6;86(9):4151-6. PubMed PMID: 24734992; PubMed Central PMCID: PMC4018083.

13.  Wickersheim ML, Blumenstiel JP. Terminator oligo blocking efficiently eliminates rRNA from Drosophila small RNA sequencing libraries. Biotechniques. 2013 Nov;55(5):269-72. PubMed PMID: 24215643; PubMed Central PMCID: PMC4077022.

14.  Woydziak ZR, Fu L, Peterson BR. Efficient and Scalable Synthesis of 4-Carboxy-Pennsylvania Green Methyl Ester: A Hydrophobic Building Block for Fluorescent Molecular Probes. Synthesis. 2014, 46, 158-164. PubMed PMID: 24914246; PubMed Central PMCID: PMC4048033.

15.  Xie Y, Gong M, Shastry T, Lohrman J, Hersam M, Ren S. Broad-spectral-response nanocarbon bulk-heterojunction excitonic photodetectors. Adv Mater.,2013, 25(25):3433-7. PubMed PMID: 23716366; PubMed Central PMCID: PMC4104188.

1.  Bender A, Woydziak ZR, Fu L, Branden M, Zhou Z, Ackley BD, Peterson BR. Novel Acid-Activated Fluorophores Reveal a Dynamic Wave of Protons in the Intestine of Caenorhabditis elegans. ACS Chem. Biol.,2013, 8, 636-642. PubMed PMID: 23256594; PubMed Central PMCID: PMC3600105.

2.  Caylor RC, Jin Y, Ackley BD. The Caenorhabditis elegans voltage-gated calcium channel subunits UNC-2 and UNC-36 and the calcium-dependent kinase UNC-43/CaMKII regulate neuromuscular junction morphology. Neural Dev.2013 May 10;8:10. PubMed PMID: 23663262; PubMed Central PMCID: PMC3661369.

3.  Huarcaya Najarro E, Ackley BD. C. elegans fmi-1/flamingo and Wnt pathway components interact genetically to control the anteroposterior neurite growth of the VD GABAergic neurons. Dev. Biol., 2013, 377, 224-35. PubMed PMID: 23376536; PubMed Central PMCID: PMC3741990.

4.  Mottram LF, Forbes S, Ackley BD, Peterson BR. Hydrophobic Analogues of Rhodamine B and Rhodamine 101: Potent Fluorescent Probes of Mitochondria in Living C. elegans. Beilstein J. Org. Chem., 2012, 8, 2156-2165. PubMed Central PMCID: PMC3554599.