Publications

How (and when) should I credit COBRE CMADP in my publications?

 

2017

  1. Fowler SC, Mosher LJ, Godar SC, Bortolato M. Assessment of gait and sensorimotor deficits in the D1CT-7 mouse model of Tourette syndrome. J Neurosci Methods 2017 Jan 15 [Epub ahead of print]. PubMed PMID: 28099872; PMCID in process.
  2. Fresta CG, Hogard ML, Caruso G, Melo Costa EE, Lazzarino G, Lunte SM. Monitoring carnosine uptake by RAW 264.7 macrophage cells using microchip electrophoresis with fluorescence detection. Anal. Methods 2017, accepted.
  3. Pes R, Godar SC, Fox AT, Burgeno LM, Strathman HJ, Jarmolowicz DP, Devoto P, Levant B, Phillips PE, Fowler SC, Bortolato M. Pramipexole enhances disadvantageous decision-making: Lack of relation to changes in phasic dopamine release. Neuropharmacology 2017 Mar 1;114:77-87. PubMed ID: 27889491; PubMed Central PMCID: PMC5241163.

2016

  1. Alexander AM, Su YC, Oliveros CH, Olson KV, Travers SL, Brown RM. Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs. Evolution 2016 Nov 25 [Epub ahead of print]. PubMed ID: 27886369; PMCID in process.
  2. Chakraborty A, Hui E, Waring AJ, Dhar P. Combined effect of synthetic protein, Mini-B, and cholesterol on a model lung surfactant mixture at the air-water interface. Biochim Biophys Acta. 2016 Apr;1858(4):904-12. PubMed PMID: 26775740; NIHMSID: 762091.
  3. Frau R, Mosher LJ, Bini V, Pillolla G, Pes R, Saba P, Fanni S, Devoto P, Bortolato M. The neurosteroidogenic enzyme 5α-reductase modulates the role of D1 dopamine receptors in rat sensorimotor gating. Psychoneuroendocrinology. 2016 Jan;63:59-67. PubMed PMID: 26415119; PubMed Central PMCID: PMC4695380.
  4. Godar SC, Mosher LJ, Strathman HJ, Gochi AM, Jones CM, Fowler SC, Bortolato M. The D1CT-7 mouse model of Tourette syndrome displays sensorimotor gating deficits in response to spatial confinement. Br J Pharmacol. 2016 Jul;173(13):2111-21. PubMed PMID: 26171666. PubMed Central PMCID: PMC4908200.
  5. Grismer JL, Schulte JA 2nd, Alexander A, Wagner P, Travers SL, Buehler MD, Welton LJ, Brown RM. The Eurasian invasion: phylogenomic data reveal multiple Southeast Asian origins for Indian Dragon Lizards. BMC Evol Biol. 2016 Feb 19;16:43. PubMed PMID: 26896057; PubMed Central PMCID: PMC4759850.
  6. Hackett JL, Wang X, Smith BR, Macdonald SJ. Mapping QTL Contributing to Variation in Posterior Lobe Morphology between Strains of Drosophila melanogaster. PLoS One. 2016 Sep 8;11(9):e0162573. PubMed PMID: 27606594; PubMed Central PMCID: PMC5015897.
  7. Hanschen ER, Marriage TN, Ferris PJ, Hamaji T, Toyoda A, Fujiyama A, Neme R, Noguchi H, Minakuchi Y, Suzuki M, Kawai-Toyooka H, Smith DR, Sparks H, Anderson J, Bakarić R, Luria V, Karger A, Kirschner MW, Durand PM, Michod RE, Nozaki H, Olson BJ. Nat Commun. 2016 Apr 22;7:11370. PubMed PMID: 27102219; PubMed Central PMCID: PMC4844696.
  8. Hasan A, Waters R, Roula B, Dana R, Yara S, Alexandre T, Paul A. Engineered Biomaterials to Enhance Stem Cell-Based Cardiac Tissue Engineering and Therapy. Macromol Biosci. 2016 Jul;16(7):958-77. PubMed PMID: 26953627; PubMed Central PMCID: PMC4931991.
  9. He M, Zeng Y. Microfluidic Exosome Analysis toward Liquid Biopsy for Cancer. J. Lab Autom. 2016 Aug;21(4):599-608. PubMed PMID: 27215792; PMCID in process.
  10. Highfill CA, Reeves GA, Macdonald SJ. Genetic analysis of variation in lifespan using a multiparental advanced intercross Drosophila mapping population. BMC Genet. 2016 Aug 2;17:113. PubMed PMID: 27485207; PubMed Central PMCID: PMC4970266.
  11. Huang W, Beer RL, Delaspre F, Wang G, Edelman HE, Park H, Azuma M, Parsons MJ. Sox9b is a mediator of retinoic acid signaling restricting endocrine progenitor differentiation. Dev Biol. 2016 Oct 1;418(1):28-39. PubMed PMID: 27565026; PubMed Central PMCID: PMC5031550.
  12. Josephson MP, Aliani R, Norris ML, Ochs ME, Gujar M, Lundquist EA. The Caenorhabditis elegans NF2/Merlin Molecule NFM-1 Non-autonomously Regulates Neuroblast Migration and Interacts Genetically with the Guidance Cue SLT-1/Slit. Genetics 2016 Dec 2. [Epub ahead of print]. PubMed ID: 27913619; PMCID in process.
  13. Josephson MP, Chai Y, Ou G, Lundquist EA. EGL-20/Wnt and MAB-5/Hox Act Sequentially to Inhibit Anterior Migration of Neuroblasts in C elegans. PLoS One. 2016;11(2):e0148658. PubMed PMID: 26863303; PubMed Central PMCID: PMC4749177.
  14. Kaplan SV, Limbocker RA, Divis JL, Osterhaus GL, Newby MD, Newman BD, Mathews TA, Johnson MA. Impaired Striatal Dopamine Release and Uptake in Wistar Rats Following Treatment with Carboplatin. ACS Chem. Neurosci. 2016, 7(6):689-699. PubMed PMID: 27145395; PubMed Central PMCID: PMC4911621.
  15. Lee MM, Peterson BR. Quantification of Small Molecule-Protein Interactions using FRET between Tryptophan and the Pacific Blue Fluorophore. ACS Omega. 2016 Dec 31;1(6):1266-1276. PubMed ID: 28058293; PubMed Central PMCID: PMC5204206.
  16. Manthey JD, Robbins MB, Moyle RG. A genomic investigation of the putative contact zone between divergent Brown Creeper (Certhia americana) lineages: chromosomal patterns of genetic differentiation. Genome. 2016 Feb; 59(2): 115-25. PubMed PMID: 26794151; PubMed Central PMCID in progress.
  17. McGill JL, Nair AD, Cheng C, Rusk RA, Jaworski DC, Ganta RR. Vaccination with an Attenuated Mutant of Ehrlichia chaffeensis Induces Pathogen-Specific CD4+ T Cell Immunity and Protection from Tick-Transmitted Wild-Type Challenge in the Canine Host. PLoS One. 2016;11(2):e0148229. PubMed PMID: 26841025; PubMed Central PMCID: PMC4739596.
  18. McGill JL, Rusk RA, Guerra-Maupome M, Briggs RE, Sacco RE. Bovine Gamma Delta T Cells Contribute to Exacerbated IL-17 Production in Response to Co-Infection with Bovine RSV and Mannheimia haemolytica. PLoS One. 2016;11(3):e0151083. PubMed PMID: 26942409; PubMed Central PMCID: PMC4778910.
  19. Miller DE, Smith CB, Yeganeh Kazemi N, Cockrell AJ, Arvanitakis AV, Blumenstiel JP, Jaspersen SL, Hawley RS. Whole-Genome Analysis of Individual Meiotic Events in Drosophila melanogaster Reveals that Noncrossover Gene Conversions are Insensitive to Interference and the Centromere Effect. Genetics. 2016 May;203(1):159-71. PubMed PMID: 26944917; PubMed Central PMCID: PMC4858771.
  20. Mosher LJ, Frau R, Pardu A, Pes R, Devoto P, Bortolato M. Selective activation of D1 dopamine receptors impairs sensorimotor gating in Long-Evans rats. Br J Pharmacol. 2016 Jul;173(13):2122-34; PubMed PMID: 26101934; PubMed Central PMCID: PMC4908197.
  21. Moyle RG, Oliveros CH, Andersen MJ, Hosner PA, Benz BW, Manthey JD, Travers SL, Brown RM, Faircloth BC. Tectonic collision and uplift of Wallacea triggered the global songbird radiation. Nat Commun. 2016 Aug 30;7:12709. PubMed PMID: 27575437; PubMed Central PMCID: PMC5013600.
  22. Oakley CE, Ahuja M, Sun WW, Entwistle R, Akashi T, Yaegashi J, Guo CJ, Cerqueira GC, Russo Wortman J, Wang CC, Chiang YM, Oakley BR. Discovery of McrA, a master regulator of Aspergillus secondary metabolism. Mol. Microbiol. 2016 Oct 24 [Epub ahead of print]. PubMed ID: 27775185; PubMed Central PMCID: PMC5218965.
  23. Oborny NJ, Costa EE, Suntornsuk L, Abreu FC, Lunte SM. Evaluation of a Portable Microchip Electrophoresis Fluorescence Detection System for the Analysis of Amino Acid Neurotransmitters in Brain Dialysis Samples. Anal Sci. 2016;32(1):35-40. PubMed PMID: 26753703; PubMed Central PMCID: PMC4875779.
  24. Pacelli S, Manoharan V, Desalvo A, Lomis N, Jodha KS, Prakash S, Paul A. Tailoring biomaterial surface properties to modulate host-implant interactions: implication in cardiovascular and bone therapy. J. Mater. Chem. B. 2016; 4(9):1586-1599. PubMed Central PMCID: PMC5019489.
  25. Park H, Galbraith R, Turner T, Mehojah J, Azuma M. Loss of Ewing sarcoma EWS allele promotes tumorigenesis by inducing chromosomal instability in zebrafish. Sci Rep. 2016 Aug 25;(6):32297. PubMed PMID: 27557633; PubMedCentral PMCID: PMC4997631.
  26. Paul A, Manoharan V, Krafft D, Assmann A, Uquillas JA, Shin SR, Hasan A, Hussain MA, Memic A, Gaharwar AK, Khademhosseini A. Nanoengineered biomimetic hydrogels for guiding human stem cell osteogenesis in three dimensional microenvironments. J. Mater. Chem. B. 2016; 4(20):3544-3554. PubMed PMID: 27525102; PubMed Central PMCID: PMC4980085.
  27. Phaniraj S, Gao Z, Rane D, Peterson BR. Hydrophobic resorufamine derivatives: potent and selective red fluorescent probes of the endoplasmic reticulum of mammalian cells. Dyes Pigm. 2016 Dec;135:127-133. PubMed ID: 27765999; PubMed Central PMCID: PMC5066811.
  28. Plevniak K, Campbell M, Myers T, Hodges A, He, M. 3D Printed Auto-mixing Chip Enables Rapid Smartphone Diagnosis of Anemia. Biomicrofluidics 2016 Oct 5;10(5):054113. eCollection 2016. PubMed ID: 27733894; PubMed Central PMCID: PMC5055529.
  29. Schwieterman AA, Steves AN, Yee V, Donelson CJ, Bentley MR, Santorella EM, Mehlenbacher TV, Pital A, Howard AM, Wilson MR, Ereddia DE, Effrein KS, McMurry JL, Ackley BD, Chisholm AD, Hudson ML. The Caenorhabditis elegans Ephrin EFN-4 Functions Non-cell Autonomously with Heparan Sulfate Proteoglycans to Promote Axon Outgrowth and Branching. Genetics. 2016 Feb;202(2):639-60. PubMed PMID: 26645816; PubMed Central PMCID: PMC4788240.
  30. Shang Y, Zeng Y, Zeng Y. Integrated Microfluidic Lectin Barcode Platform for High-Performance Focused Glycomic Profiling. Sci Rep. 2016 Feb 2;6:20297. PubMed PMID: 26831207; PubMed Central PMCID: PMC4735825.
  31. Wang X, Hinshaw KC, Macdonald SJ, Chandler JR. Draft Genome Sequence of Chromobacterium violaceum Strain CV017. Genome Announc. 2016 Mar 3;4(2) PubMed PMID: 26941151; PubMed Central PMCID: PMC4777762.
  32. Wang Y, Southard KM, Zeng Y. Digital PCR using micropatterned superporous absorbent array chips. Analyst. 2016 Mar 24; PubMed PMID: 27010726; PubMed Central PMCID: PMC4899130.
  33. Waters R, Pacelli S, Maloney R, Medhi I, Ahmed RP, Paul A. Stem cell secretome-rich nanoclay hydrogel: a dual action therapy for cardiovascular regeneration. Nanoscale. 2016 Mar 31;8(14):7371-6. PubMed PMID: 26876936; PubMed Central PMCID: PMC4863075.
  34. Whitlow J, Pacelli S, Paul A. Polymeric nanohybrids as a new class of therapeutic biotransporter. Macromol. Chem. Phys. 2016, in press.
  35. Zhang P, He M, Zeng Y. Ultrasensitive microfluidic analysis of circulating exosomes using a nanostructured graphene oxide/polydopamine coating. Lab Chip. 2016 Aug 2;16(16):3033-42. PubMed PMID: 27045543; PubMed Central PMCID: PMC4970962.
  36. Zhao Z, Yang Y, Zeng Y, He M. A microfluidic ExoSearch chip for multiplexed exosome detection towards blood-based ovarian cancer diagnosis. Lab Chip. 2016 Jan 26;16(3):489-96. PubMed PMID: 26645590; PubMed Central PMCID: PMC4729647.

2015

  1. Alhakamy NA, Elandaloussi I, Ghazvini S, Berkland CJ, Dhar P. Effect of lipid headgroup charge and pH on the stability and membrane insertion potential of calcium condensed gene complexes. Langmuir. 2015 Apr 14;31(14):4232-45. doi: 10.1021/la504970n. Epub 2015 Mar 30. PubMed PMID: 25768428.
  2. Chakraborty A, Mucci NJ, Tan ML, Steckley A, Zhang T, Forrest ML, Dhar P. Phospholipid composition modulates carbon nanodiamond-induced alterations in phospholipid domain formation. Langmuir. 2015 May 12;31(18):5093-104. PubMed PMID: 25876023; PubMed Central PMCID: PMC4702515.
  3. Colicchio JM, Miura F, Kelly JK, Ito T, Hileman LC. DNA methylation and gene expression in Mimulus guttatus. BMC Genomics. 2015 Jul 7;16:507. PubMed PMID: 26148779; PubMed Central PMCID: PMC4492170.
  4. de Campos RP, Siegel JM, Fresta CG, Caruso G, da Silva JA, Lunte SM. Indirect detection of superoxide in RAW 264.7 macrophage cells using microchip electrophoresis coupled to laser-induced fluorescence. Anal Bioanal Chem. 2015 Sep;407(23):7003-12. PubMed PMID: 26159570; PubMed Central PMCID: PMC4898195.
  5. Erwin AA, Galdos MA, Wickersheim ML, Harrison CC, Marr KD, Colicchio JM, Blumenstiel JP. piRNAs Are Associated with Diverse Transgenerational Effects on Gene and Transposon Expression in a Hybrid Dysgenic Syndrome of D virilis. PLoS Genet. 2015 Aug;11(8):e1005332. PubMed PMID: 26241928; PubMed Central PMCID: PMC4524669.
  6. Frau R, Abbiati F, Bini V, Casti A, Caruso D, Devoto P, Bortolato M. Targeting neurosteroid synthesis as a therapy for schizophrenia-related alterations induced by early psychosocial stress. Schizophr Res. 2015 Nov;168(3):640-8. PubMed PMID: 25999042; PubMed Central PMCID: PMC4628592.
  7. Ghazvini S, Ricke B, Zasadzinski JA, Dhar P. Monitoring phases and phase transitions in phosphatidylethanolamine monolayers using active interfacial microrheology. Soft Matter. 2015 Apr 22;11(17):3313-21. PubMed PMID: 25782993; PubMed Central PMCID: PMC4408260.
  8. Hasan A, Khattab A, Islam MA, Hweij KA, Zeitouny J, Waters R, Sayegh M, Hossain M, Paul A. Injectable Hydrogels for Cardiac Tissue Repair after Myocardial Infarction. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). 2015 November;2(11):1500122. PubMed PMID: 27668147; PubMed Central PMCID: PMC5033116.
  9. Hasan A, Paul A, Memic A, Khademhosseini A. A multilayered microfluidic blood vessellike structure. Biomed Microdevices. 2015 Oct;17(5):88. PubMed PMID: 26256481; PubMed Central PMCID: PMC4890640.
  10. Hartin SN, Hudson ML, Yingling C, Ackley BD. A Synthetic Lethal Screen Identifies a Role for Lin-44/Wnt in C. elegans Embryogenesis. PLoS One. 2015 May 4; 10(5):e0121397. PubMed PMID: 25938228; PubMed Central PMCID: PMC4418752.
  11. Hymel D, Cai S, Sun Q, Henkhaus RS, Perera C, Peterson BR. Fluorescent mimics of cholesterol that rapidly bind surfaces of living mammalian cells. Chem Commun (Camb). 2015 Oct 7;51(78):14624-7. PubMed PMID: 26287483; PubMed Central PMCID: PMC4620717.
  12. Ma J, Pan P, Anyika M, Blagg BS, Dobrowsky RT. Modulating Molecular Chaperones Improves Mitochondrial Bioenergetics and Decreases the Inflammatory Transcriptome in Diabetic Sensory Neurons. ACS Chem Neurosci. 2015 Sep 16;6(9):1637-48. PubMed PMID: 26161583; PubMed Central PMCID: PMC4573952.
  13. Meinig JM, Peterson BR. Anticancer/antiviral agent Akt inhibitor-IV massively accumulates in mitochondria and potently disrupts cellular bioenergetics. ACS Chem Biol. 2015 Feb 20;10(2):570-6. PubMed PMID: 25415586; PubMed Central PMCID: PMC4340353.
  14. Meinig JM, Fu L, Peterson BR. Synthesis of Fluorophores that Target Small Molecules to the Endoplasmic Reticulum of Living Mammalian Cells. Angew Chem Int Ed Engl. 2015 Aug 10;54(33):9696-9. PubMed PMID: 26118368; PubMed Central PMCID: PMC4539238.
  15. Meneses D, Gunasekara DB, Pichetsurnthorn P, da Silva JA, de Abreu FC, Lunte SM. Evaluation of in-channel amperometric detection using a dual-channel microchip electrophoresis device and a two-electrode potentiostat for reverse polarity separations. Electrophoresis. 2015 Feb;36(3):441-8. PubMed PMID: 25256669; PubMed Central PMCID: PMC4433753.
  16. Merkes C, Turkalo TK, Wilder N, Park H, Wenger LW, Lewin SJ, Azuma M. Ewing sarcoma ewsa protein regulates chondrogenesis of Meckel's cartilage through modulation of Sox9 in zebrafish. PLoS One. 2015;10(1):e0116627. PubMed PMID: 25617839; PubMed Central PMCID: PMC4305327.
  17. Paul A. Nanocomposite hydrogels: an emerging biomimetic platform for myocardial therapy and tissue engineering. Nanomedicine (Lond). 2015 May;10(9):1371-4. PubMed PMID: 25996115; PubMed Central PMCID: PMC4854277.
  18. Saylor RA, Reid EA, Lunte SM. Microchip electrophoresis with electrochemical detection for the determination of analytes in the dopamine metabolic pathway. Electrophoresis. 2015 Aug;36(16):1912-9. PubMed PMID: 25958983; PubMed Central PMCID: PMC4875780.
  19. Scott DE, Willis SD, Gabbert S, Johnson D, Naylor E, Janle EM, Krichevsky JE, Lunte CE, Lunte SM. Development of an on-animal separation-based sensor for monitoring drug metabolism in freely roaming sheep. Analyst. 2015 Feb 20;PubMed PMID: 25697221; PubMed Central PMCID: PMC4437826.
  20. Shin M, Kaplan SV, Raider KD, Johnson MA. Simultaneous measurement and quantitation of 4-hydroxyphenylacetic acid and dopamine with fast-scan cyclic voltammetry. Analyst. 2015 May 7;140(9):3039-47. PubMed PMID: 25785694; PubMed Central PMCID: PMC4507372.
  21. Smalley NE, An D, Parsek MR, Chandler JR, Dandekar AA. Quorum Sensing Protects Pseudomonas aeruginosa against Cheating by Other Species in a Laboratory Coculture Model. J. Bacteriol. 2015 Oct;197(19):3154-9. PubMed PMID: 26195596; PubMed Central PMCID: PMC4560282.
  22. Sun M, Johnson MA. Measurement of total antioxidant capacity in sub-μL blood samples using craft paper-based analytical devices. RSC Advances. 2015, 5(69):55633-55639. PubMed Central PMCID: PMC5026239.
  23. Sundarajan L, Norris ML, Lundquist EA. SDN-1/Syndecan Acts in Parallel to the Transmembrane Molecule MIG-13 to Promote Anterior Neuroblast Migration. G3 (Bethesda). 2015 May 28;5(8):1567-74. PubMed PMID: 26022293; PubMed Central PMCID: PMC4528313.
  24. Truong TT, Seyedsayamdost M, Greenberg EP, Chandler JR. A Burkholderia thailandensis Acyl-Homoserine Lactone-Independent Orphan LuxR Homolog That Activates Production of the Cytotoxin Malleilactone. J. Bacteriol. 2015 Nov;197(21):3456-62. PubMed PMID: 26283771; PubMed Central PMCID: PMC4621068.
  25. Waters WR, Maggioli MF, Palmer MV, Thacker TC, McGill JL, Vordermeier HM, Berney-Meyer L, Jacobs WR Jr, Larsen MH. Interleukin-17A as a Biomarker for Bovine Tuberculosis. Clin Vaccine Immunol. 2015 Dec 16;23(2):168-80. PubMed PMID: 26677202; PubMed Central PMCID: PMC4744917.
  26. Wiley EO, Fuiten AM, Doosey, MH, Lohman, BK, Merkes, C, Azuma, M. The Caudal Skeleton of the Zebrafish, Danio rerio, from a Phylogenetic Perspective: A Polyural Interpretation of Homologous Structures. Copeia 2015 103(4): 740-50. NIHMS ID: NIHMS814625; PMCID in process

2014

  1. Ackley BD. Wnt-signaling and planar cell polarity genes regulate axon guidance along the anteroposterior axis in C elegans. Dev Neurobiol. 2014 Aug;74(8):781-96. PubMed PMID: 24214205; PubMed Central PMCID: PMC4167394.
  2. Blumenstiel JP. Whole genome sequencing in Drosophila virilis identifies Polyphemus, a recently activated Tc-1 like transposon with a possible role in hybrid dysgenesis. Mobile DNA. 2014, Feb 20;5(1):6. PubMed PMID: 24555450; PubMed PMCID: PMC3941972.
  3. Blumenstiel JP, Chen X, He M and Bergman CM. An Age-of-Allele test for neutrality of transposable element insertions. Genetics. 2014 Feb;196(2):523-38. PubMed PMID: 24336751; PubMed Central PMCID: PMC3914624.
  4. Frau R, Bini V, Pes R, Pillolla G, Saba P, Devoto P, Bortolato M. Inhibition of 17α-hydroxylase/C17,20 lyase reduces gating deficits consequent to dopaminergic activation. Psychoneuroendocrinology. 2014 Jan;39:204-13. PubMed PMID: 24140269; PubMed Central PMCID: PMC3940882.
  5. Frau R, Bini V, Pillolla G, Malherbe P, Pardu A, Thomas AW, Devoto P, Bortolato M. Positive allosteric modulation of GABAB receptors ameliorates sensorimotor gating in rodent models. CNS Neurosci Ther. 2014 Jul;20(7):679-84. PubMed PMID: 24703381; PubMed Central PMCID: PMC4062587.
  6. Godar SC, Bortolato M. Gene-sex interactions in schizophrenia: focus on dopamine neurotransmission. Front Behav Neurosci. 2014;8:71. PubMed PMID: 24639636; PubMed Central PMCID: PMC3944784.
  7. Godar SC, Mosher LJ, Di Giovanni G, Bortolato M. Animal models of tic disorders: a translational perspective. J Neurosci Methods. 2014 Dec 30;238:54-69. PubMed PMID: 25244952; PubMed Central PMCID: PMC4345166.
  8. Gunasekara DB, Siegel JM, Caruso G, Hulvey MK, Lunte SM. Microchip electrophoresis with amperometric detection method for profiling cellular nitrosative stress markers. Analyst. 2014 Jul 7;139(13):3265-73. PubMed PMID: 24728039; PubMed Central PMCID: PMC4084785.
  9. He M, Crow J, Roth M, Zeng Y, Godwin AK. Integrated immunoisolation and protein analysis of circulating exosomes using microfluidic technology. Lab Chip. 2014 Oct 7;14(19):3773-80. PubMed PMID: 25099143; PubMed Central PMCID: PMC4161194.
  10. Hymel D, Woydziak ZR, Peterson BR. Detection of protein-protein interactions by proximity-driven S(N)Ar reactions of lysine-linked fluorophores. J Am Chem Soc. 2014 Apr 9;136(14):5241-4. PubMed PMID: 24660775; PubMed Central PMCID: PMC4004224.
  11. Park H, Turkalo TK, Nelson K, Folmsbee SS, Robb C, Roper B, Azuma M. Ewing sarcoma EWS protein regulates midzone formation by recruiting Aurora B kinase to the midzone. Cell Cycle. 2014;13(15):2391-9. PubMed PMID: 25483190; PubMed Central PMCID: PMC4128884.
  12. Sun M, Kaplan SV, Gehringer RC, Limbocker RA, Johnson MA. Localized Drug Application and Sub-Second Voltammetric Dopamine Release Measurements in a Brain Slice Perfusion Device. Anal. Chem., 2014 May 6;86(9):4151-6. PubMed PMID: 24734992; PubMed Central PMCID: PMC4018083.
  13. Sundararajan L, Norris ML, Schöneich S, Ackley BD, Lundquist EA. The fat-like cadherin CDH-4 acts cell-non-autonomously in anterior-posterior neuroblast migration. Dev Biol. 2014 Aug 15;392(2):141-52. PubMed PMID: 24954154; PubMed Central PMCID: PMC4136450.
  14. Woydziak, ZR, Fu, L, Peterson, BR. Efficient and Scalable Synthesis of 4-Carboxy-Pennsylvania Green Methyl Ester: A Hydrophobic Building Block for Fluorescent Molecular Probes. Synthesis. 2014, 46, 158-164. PubMed PMID: 24914246; PubMed Central PMCID: PMC4048033.

2013

  1. Alhakhamy N, Kaviratna A, Berkland CJ and Dhar P. Dynamic measurements of membrane insertion potential of synthetic cell penetrating peptides. Langmuir. 2013 Dec 10;29(49):15336-49. PubMed PMID: 24294979; PubMed Central PMCID: PMC3918496.
  2. Bender, A.; Woydziak, Z. R.; Fu, L.; Branden, M.; Zhou, Z.; Ackley, B. D.; Peterson, B. R. “Novel Acid-Activated Fluorophores Reveal a Dynamic Wave of Protons in the Intestine of Caenorhabditis elegans” ACS Chem. Biol., 2013, 8, 636-642. PubMed PMID: 23256594; PubMed Central PMCID: PMC3600105.
  3. Bortolato M, Frau R, Godar SC, Mosher LJ, Paba S, Marrosu F, Devoto P. The Implication of Neuroactive Steroids in Tourette's Syndrome Pathogenesis: A Role for 5α-Reductase? J Neuroendocrinol. 2013 Nov;25(11):1196-208. PubMed PMID: 23795653; PubMed Central PMCID: PMC3849218.
  4. Bortolato, M, Godar, SC, Tambaro, S, Li, FG, Devoto, P, Coba, MP, Chen, K, Shih, JC. Early postnatal inhibition of serotonin synthesis results in long-term reductions of perseverative behaviors, but not aggression, in MAO A-deficient mice. Neuropharmacology. 2013, Dec;75:223-32. PubMed PMID: 23871843; PubMed Central PMCID: PMC3849223.
  5. Caylor RC, Jin Y, Ackley BD. The Caenorhabditis elegans voltage-gated calcium channel subunits UNC-2 and UNC-36 and the calcium-dependent kinase UNC-43/CaMKII regulate neuromuscular junction morphology. Neural Dev. 2013 May 10;8:10. PubMed PMID: 23663262; PubMed Central PMCID: PMC3661369.
  6. Cui, H, Hong, C, Ying, A, Yang, X, and Ren, SQ, Ultrathin gold nanowire-functionalized carbon nanotubes for hybrid molecular sensing. ACS Nano. 2013 Sep 24;7(9):7805-11. PubMed PMID: 23987824; PubMed Central PMCID: PMC3946550.
  7. El-Gendy NA, Kaviratna A, Berkland CJ, and Dhar P. Delivery and performance of surfactant replacement therapies to treat pulmonary disorders. Therapeutic Delivery. 2013 Aug;4(8):951-80. PubMed PMID:23919474; PubMed Central PMCID: PMC3840129.
  8. Huarcaya Najarro, E. and Ackley, B.D. “C. elegans fmi-1/flamingo and Wnt pathway components interact genetically to control the anteroposterior neurite growth of the VD GABAergic neurons”, Dev. Biol., 2013, 377, 224-35. PubMed PMID: 23376536; PubMed Central PMCID: PMC3741990.
  9. Wickersheim ML, Blumenstiel JP. Terminator oligo blocking efficiently eliminates rRNA from Drosophila small RNA sequencing libraries. Biotechniques. 2013 Nov;55(5):269-72. PubMed PMID: 24215643; PubMed Central PMCID: PMC4077022.
  10. Xie, Y.; Gong, M.; Shastry, T.; Lohrman, J.; Hersam, M.; and Ren, S. “Broad-spectral-response nanocarbon bulk-heterojunction excitonic photodetectors” Adv Mater., 2013, 25(25):3433-7. PubMed PMID: 23716366; PubMed Central PMCID: PMC4104188.

2012

  1. Mottram, L. F.; Forbes, S.; Ackley, B. D.; Peterson, B. R. “Hydrophobic Analogues of Rhodamine B and Rhodamine 101: Potent Fluorescent Probes of Mitochondria in Living C. elegans” Beilstein J. Org. Chem., 2012, 8, 2156-2165. PubMed Central PMCID: PMC3554599.

*COBRE CMADP Participants


Recent News

February 2017
CMADP Project Investigators co-author Top Downloaded article in Lab on a Chip

CMADP Co-I awarded R01 from NIH National Cancer Institute

CMADP Graduate's research featured on cover of Genetics and in other journals

October 2016
CMADP Co-I receives Mathers Foundation grant

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Simons Auditorium, HBC, West Campus

"Integrated Microfluidic Systems for Forensic DNA Analysis"
In 2006, we demonstrated that microfluidic technology could provide a ‘lab-on-a-chip’ solution for real-world genetic analysis. Sample-in/answer-out functionality was shown for the detection of bacteria in mouse blood and in a human nasal swab, with a sub-30 minute analytical time for DNA extraction, amplification, electrophoretic separation and detection. We extrapolated these technology developments to the analysis of short tandem repeats (STR) in human DNA; these clinically-insignificant (presumably) tetranucleotide sequences function effectively for statistically-relevant matching in human identification. Our efforts led to the development of a commercializable system designed for implementation in crime labs for STR profiling convicted felons or, in some states, profiling arrestees in booking stations. An intricate but functional microfluidic architecture allowed sample-to-profile to be achieved from a cheek swab in less than 80 minutes, using nanoliter flow control, infrared thermocycling and rapid electrophoretic separation of DNA with 5-color fluorescence detection. We have since demonstrated the fabrication of hybrid microdevices composed of inexpensive polymeric materials, many of these commercial-off-the-shelf. We have designed, built and functionalized fully-integrated DNA analysis chemistry/microfluidics on a rotationally-driven system the size of a compact disc. With this system, DNA can be extracted from a swab, PCR amplified to generate an abundance of DNA fragments of the STR loci, followed by resolution of those fragments in a separation in a 4 cm Leff channel that is complete in <300 sec with a 2-base resolution. The processes that allow for swab in–profile out microfluidics are carried out on an instrument that can be carried in one hand and weighs ~14 lbs, ultimately allowing for facile rapid human identification/screening in the field.
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